Release Candidate 1

This is the first release of the pipeline to be tested and debugged.
Should work on any unix based system with a bash script.

Sorry no version for windows. (No one does bioinformatics on win, get over it and learn linux)
Not tested on mac. (No reason for it not to work, but if there is a possibility it can fail, it usually does 👎 )

? Could possibly fail for "sed" in mac.