Update documentation

foerstner-lab · Jan 13, 2015 · 893372e · 893372e
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diff --git a/docs/source/subcommands.rst b/docs/source/subcommands.rst
@@ -336,3 +336,7 @@ vs. p-values / adjusted p-values).
 
   optional arguments:
     -h, --help    show this help message and exit
+  --max_pvalue MAX_PVALUE
+                          Maximum adjusted p-value for genes considered to be
+                          regulated. Genes with adjusted p-values below will be
+                          marked red. (default 0.05)