Fix error in DESeq example command

foerstner-lab · Apr 7, 2024 · 3c58d03 · 3c58d03
1 parent aa25b1a
commit 3c58d03
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/docs/source/example_analysis.rst b/docs/source/example_analysis.rst
@@ -205,7 +205,7 @@ subcommand ``deseq`` which makes use of the R library `DESeq2
 
 ::
 
-   $ reademption deseq -l InSPI2_R1.fa.bz2,InSPI2_R2.fa.bz2,LSP_R1.fa.bz2,LSP_R2.fa.bz2 -c InSPI2,InSPI2,LSP,LSP -r 1,2,1,2 --libs_by_species salmonella=InSPI2_R1,InSPI2_R2,LSP_R1,LSP_R2 project_path READemption_analysis
+   $ reademption deseq -l InSPI2_R1.fa.bz2,InSPI2_R2.fa.bz2,LSP_R1.fa.bz2,LSP_R2.fa.bz2 -c InSPI2,InSPI2,LSP,LSP -r 1,2,1,2 --libs_by_species salmonella=InSPI2_R1,InSPI2_R2,LSP_R1,LSP_R2 --project_path READemption_analysis
 
 We have to tell READemption which libraries are replicates of which
 condition. This is done by the parameter ``-l``, ``-c`` and ``-r`` . ``-l``
@@ -513,4 +513,4 @@ classes.
 
 ::
 
-   $ reademption viz_deseq --project_path READemption_analysis
+   $ reademption viz_deseq --project_path READemption_analysis