Set version to 1.0.1

foerstner-lab · Jul 11, 2020 · 04d2044 · 04d2044
1 parent e5bd422
commit 04d2044
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Showing 29 changed files with 20 additions and 646 deletions.
diff --git a/CHANGELOG.txt b/CHANGELOG.txt
@@ -1,3 +1,5 @@
+v1.0.1 (2020-07-11)
+- Hotfix of align error cause by realign arg still present
 v1.0.0 (2020-07-08)
 - Added calculation of TPM (transcripts per million)
 - Added automated integration of subcommands and parameters to the documentation

diff --git a/Makefile b/Makefile
@@ -34,7 +34,7 @@ new_release:
 	@echo "* Add description to CHANGELOG.txt"
 	@echo "* Refresh the two reademption links in docs and docs/source."
 	      "*  this is need for building the docu on 'read the docs'. See last point of this list."
-	@echo "cd docs && ln -s ../bin/reademption reademption && cd source && ../../bin/reademption reademption && cd ../.."
+	@echo "rm docs/reademption && rm docs/source/reademption && cd docs && ln -s ../bin/reademption reademption && cd source && ln -s ../../bin/reademption reademption && cd ../.."
 	@echo "* Create new docs"
 	@echo "  make html_doc"
 	@echo "* Create package"

diff --git a/bin/reademption b/bin/reademption
@@ -9,7 +9,7 @@ __author__ = "Konrad Foerstner <[email protected]>, Till Sauerwein <sauerwein
 __copyright__ = "2011-2020 by Konrad Foerstner <[email protected], , Till Sauerwein <[email protected]>"
 __license__ = "ISC license"
 __email__ = "[email protected], [email protected]"
-__version__ = "1.0.0"
+__version__ = "1.0.1"
 
 
 def main():

diff --git a/docs/build/doctrees/docker_image.doctree b/docs/build/doctrees/docker_image.doctree
diff --git a/docs/build/doctrees/environment.pickle b/docs/build/doctrees/environment.pickle
diff --git a/docs/build/doctrees/example_analysis.doctree b/docs/build/doctrees/example_analysis.doctree
diff --git a/docs/build/doctrees/index.doctree b/docs/build/doctrees/index.doctree
diff --git a/docs/build/doctrees/installation.doctree b/docs/build/doctrees/installation.doctree
diff --git a/docs/build/doctrees/license.doctree b/docs/build/doctrees/license.doctree
diff --git a/docs/build/doctrees/live_and_installation_image.doctree b/docs/build/doctrees/live_and_installation_image.doctree
diff --git a/docs/build/doctrees/subcommands.doctree b/docs/build/doctrees/subcommands.doctree
diff --git a/docs/build/doctrees/troubleshooting.doctree b/docs/build/doctrees/troubleshooting.doctree
diff --git a/docs/build/doctrees/versions.doctree b/docs/build/doctrees/versions.doctree
diff --git a/docs/build/html/.buildinfo b/docs/build/html/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: c741056ab09da0ac4fd08d495d4d90f3
+config: fac7b175e42a77c563865d24476733a6
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/docs/build/html/_static/documentation_options.js b/docs/build/html/_static/documentation_options.js
@@ -1,6 +1,6 @@
 var DOCUMENTATION_OPTIONS = {
     URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'),
-    VERSION: '1.0.0',
+    VERSION: '1.0.1',
     LANGUAGE: 'None',
     COLLAPSE_INDEX: false,
     BUILDER: 'html',

diff --git a/docs/build/html/docker_image.html b/docs/build/html/docker_image.html
@@ -7,7 +7,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>Docker image &mdash; READemption 1.0.0 documentation</title>
+  <title>Docker image &mdash; READemption 1.0.1 documentation</title>
 
 
 

diff --git a/docs/build/html/example_analysis.html b/docs/build/html/example_analysis.html
@@ -7,7 +7,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>Performing an example analysis &mdash; READemption 1.0.0 documentation</title>
+  <title>Performing an example analysis &mdash; READemption 1.0.1 documentation</title>
 
 
 

diff --git a/docs/build/html/index.html b/docs/build/html/index.html
@@ -7,7 +7,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>READemption - A RNA-Seq Analysis Pipeline &mdash; READemption 1.0.0 documentation</title>
+  <title>READemption - A RNA-Seq Analysis Pipeline &mdash; READemption 1.0.1 documentation</title>
 
 
 

diff --git a/docs/build/html/installation.html b/docs/build/html/installation.html
@@ -7,7 +7,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>Installation and updating &mdash; READemption 1.0.0 documentation</title>
+  <title>Installation and updating &mdash; READemption 1.0.1 documentation</title>
 
 
 

diff --git a/docs/build/html/license.html b/docs/build/html/license.html
@@ -7,7 +7,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>License &mdash; READemption 1.0.0 documentation</title>
+  <title>License &mdash; READemption 1.0.1 documentation</title>
 
 
 

diff --git a/docs/build/html/live_and_installation_image.html b/docs/build/html/live_and_installation_image.html
@@ -7,7 +7,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>Live system and installation image &mdash; READemption 1.0.0 documentation</title>
+  <title>Live system and installation image &mdash; READemption 1.0.1 documentation</title>
 
 
 

diff --git a/docs/build/html/search.html b/docs/build/html/search.html
@@ -7,7 +7,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>Search &mdash; READemption 1.0.0 documentation</title>
+  <title>Search &mdash; READemption 1.0.1 documentation</title>
 
 
 

diff --git a/docs/build/html/subcommands.html b/docs/build/html/subcommands.html
@@ -7,7 +7,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>READemption’s subcommands &mdash; READemption 1.0.0 documentation</title>
+  <title>READemption’s subcommands &mdash; READemption 1.0.1 documentation</title>
 
 
 

diff --git a/docs/build/html/troubleshooting.html b/docs/build/html/troubleshooting.html
@@ -7,7 +7,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>Troubleshooting &mdash; READemption 1.0.0 documentation</title>
+  <title>Troubleshooting &mdash; READemption 1.0.1 documentation</title>
 
 
 

diff --git a/docs/build/html/versions.html b/docs/build/html/versions.html
@@ -7,7 +7,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>Versions/Change log &mdash; READemption 1.0.0 documentation</title>
+  <title>Versions/Change log &mdash; READemption 1.0.1 documentation</title>