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SARS-CoV-2 verison of RAMPART #1

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SARS-CoV-2 verison of RAMPART #1

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Commits on May 2, 2021

  1. created python scripts and snakemake files for detection of SARS-COV-… 

    …2 variants
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  2. adding strand matching pipeline to server scripts

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  3. showing variant data on front-end

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    janka000 committed May 2, 2021
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  4. moving old docs and examples to /old folder

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    janka000 committed May 2, 2021
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  5. added new docs and SARS-CoV-2 protocols

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    janka000 committed May 2, 2021
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  6. added new environment file

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    janka000 committed May 2, 2021
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  7. removing comments and fixing code style&formatting

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    janka000 committed May 2, 2021
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Commits on May 3, 2021

  1. I figured out that we need the if statement we removed

    @janka000
    janka000 committed May 3, 2021
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  2. added new screenshots

    @janka000
    janka000 committed May 3, 2021
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  3. removing custom configuration

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    janka000 committed May 3, 2021
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  4. removing __pycache__

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    janka000 committed May 3, 2021
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Commits on May 4, 2021

  1. moving pipleines to separate folder and restoring EBOLA examples

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  2. removing default_protocol from /old folder

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    janka000 committed May 4, 2021
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  3. removing forgotten changes

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    janka000 committed May 4, 2021
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Commits on May 5, 2021

  1. tidying up

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    janka000 committed May 5, 2021
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  2. tidying up python scripts + requested changes

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    janka000 committed May 5, 2021
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Commits on May 6, 2021

  1. new mutations file + some additional info in json

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    janka000 committed May 6, 2021
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Commits on May 7, 2021

  1. another requested changes

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    janka000 committed May 7, 2021
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Commits on May 10, 2021

  1. small fix

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    janka000 committed May 10, 2021
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Commits on May 14, 2021

  1. variantsTree maybe fixed

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    janka000 committed May 14, 2021
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  2. fixing whitespaces and mutationsTree

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    janka000 committed May 14, 2021
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Commits on May 16, 2021

  1. annotatedPath fix

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    janka000 committed May 16, 2021
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Commits on Jul 27, 2021

  1. added log files for variant calling pipeline

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    janka000 committed Jul 27, 2021
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  2. added support for structure with csv in subfolders to strand_matching… 

    … pipeline
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    janka000 committed Jul 27, 2021
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  3. added support for gziped fastq files in variant calling pipeline

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    janka000 committed Jul 27, 2021
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