Clean the FLUX module code and fix getopt() bug #723
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| name: Compilation Testing for DYAD | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| jobs: | |
| compile-flux: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| flux: [ 0.52.0, 0.49.0] | |
| mode: ["UCX"] | |
| os: [ ubuntu-20.04 ] | |
| compiler: [ gcc ] | |
| gcc: [ 10 ] | |
| profiler_mode: ["NONE"] | |
| name: ${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.gcc }}-${{ matrix.flux }}-${{ matrix.mode }} | |
| runs-on: ${{ matrix.os }} # Docker-based jobs must run on Ubuntu | |
| env: | |
| FLUX_VERSION: ${{ matrix.flux }} | |
| CC: gcc-${{ matrix.gcc }} | |
| CXX: g++-${{ matrix.gcc }} | |
| SPACK_DIR: "/home/runner/work/spack" | |
| DYAD_INSTALL_PREFIX: "/home/runner/work/dyad/install" | |
| DYAD_KVS_NAMESPACE: "test" | |
| DYAD_DTL_MODE: ${{ matrix.mode }} | |
| DYAD_PATH: "/home/runner/work/dyad/temp/" | |
| steps: | |
| - name: Push checkout | |
| if: github.event_name == 'push' | |
| uses: actions/checkout@v3 | |
| - name: PR checkout | |
| if: github.event_name == 'pull_request' | |
| uses: actions/checkout@v3 | |
| with: | |
| ref: ${{ github.event.pull_request.head.sha }} | |
| - name: Set up GCC | |
| uses: egor-tensin/setup-gcc@v1 | |
| with: | |
| version: ${{ matrix.gcc }} | |
| - name: Install system deps | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y --no-install-recommends \ | |
| gcc g++ gfortran \ | |
| cmake \ | |
| autoconf \ | |
| automake \ | |
| libtool \ | |
| libtool-bin \ | |
| openmpi-bin \ | |
| libopenmpi-dev \ | |
| libarchive-dev \ | |
| ncurses-bin \ | |
| hwloc \ | |
| lua5.3 liblua5.3-dev \ | |
| python3.10 \ | |
| python3-pip \ | |
| python3-venv \ | |
| libczmq-dev \ | |
| lua-posix-dev \ | |
| lz4 \ | |
| pkgconf \ | |
| libzmq5 \ | |
| sqlite | |
| sudo pip install jsonschema cffi ply pyyaml | |
| sudo chmod 777 /usr -R | |
| - name: Install Spack | |
| run: | | |
| git clone https://github.com/spack/spack.git ${SPACK_DIR} | |
| - name: Load existing dependencies | |
| run: | | |
| . ${SPACK_DIR}/share/spack/setup-env.sh | |
| mkdir -p /home/runner/.spack | |
| GCC_VERSION="9.3.0" | |
| if [[ $CC == 'gcc-10' ]]; then | |
| GCC_VERSION="10.3.0" | |
| fi | |
| cat > /home/runner/.spack/packages.yaml <<EOF | |
| packages: | |
| all: | |
| target: [x86_64] | |
| providers: | |
| mpi: [openmpi] | |
| python: | |
| buildable: False | |
| externals: | |
| - spec: "[email protected]" | |
| prefix: /usr | |
| py-cffi: | |
| buildable: False | |
| externals: | |
| - spec: "[email protected]" | |
| prefix: /usr | |
| py-jsonschema: | |
| buildable: False | |
| externals: | |
| - spec: "[email protected]" | |
| prefix: /usr | |
| py-ply: | |
| buildable: False | |
| externals: | |
| - spec: "[email protected]" | |
| prefix: /usr | |
| py-pyyaml: | |
| buildable: False | |
| externals: | |
| - spec: "[email protected]" | |
| prefix: /usr | |
| czmq: | |
| buildable: False | |
| externals: | |
| - spec: "[email protected]" | |
| prefix: /usr | |
| sqlite: | |
| buildable: False | |
| externals: | |
| - spec: "[email protected]" | |
| prefix: /usr | |
| libzmq: | |
| buildable: False | |
| externals: | |
| - spec: "[email protected]" | |
| prefix: /usr | |
| lua: | |
| buildable: False | |
| externals: | |
| - spec: "[email protected]" | |
| prefix: /usr | |
| lua-luaposix: | |
| buildable: False | |
| externals: | |
| - spec: "[email protected]" | |
| prefix: /usr | |
| lz4: | |
| buildable: False | |
| externals: | |
| - spec: "[email protected]" | |
| prefix: /usr | |
| ncurses: | |
| buildable: False | |
| externals: | |
| - spec: "[email protected]" | |
| prefix: /usr | |
| pkgconf: | |
| buildable: False | |
| externals: | |
| - spec: "[email protected]" | |
| prefix: /usr | |
| hwloc: | |
| buildable: False | |
| externals: | |
| - spec: "[email protected]" | |
| prefix: /usr | |
| libarchive: | |
| buildable: False | |
| externals: | |
| - spec: "[email protected]" | |
| prefix: /usr | |
| autoconf: | |
| buildable: False | |
| externals: | |
| - spec: "[email protected]" | |
| prefix: /usr | |
| automake: | |
| buildable: False | |
| externals: | |
| - spec: "[email protected]" | |
| prefix: /usr | |
| libtool: | |
| buildable: False | |
| externals: | |
| - spec: "[email protected]" | |
| prefix: /usr | |
| m4: | |
| buildable: False | |
| externals: | |
| - spec: "[email protected]" | |
| prefix: /usr | |
| openmpi: | |
| buildable: False | |
| externals: | |
| - spec: "[email protected]" | |
| prefix: /usr | |
| openssl: | |
| buildable: False | |
| externals: | |
| - spec: "[email protected]" | |
| prefix: /usr | |
| pkg-config: | |
| buildable: False | |
| externals: | |
| - spec: "[email protected]" | |
| prefix: /usr | |
| gcc: | |
| externals: | |
| - spec: gcc@${GCC_VERSION} languages=c,c++ | |
| prefix: /usr | |
| extra_attributes: | |
| compilers: | |
| c: ${CC} | |
| cxx: ${CXX} | |
| buildable: False | |
| EOF | |
| echo "-------------------------------" | |
| cat /home/runner/.spack/packages.yaml | |
| echo "-------------------------------" | |
| spack compiler find --scope=user | |
| if [[ $CC == 'gcc-10' ]]; then | |
| spack config add "packages:all:compiler:[[email protected]]" | |
| else | |
| spack config add "packages:all:compiler:[[email protected]]" | |
| fi | |
| spack external find | |
| spack spec flux-core@${FLUX_VERSION} | |
| spack spec cpp-logger@develop | |
| if [[ $DYAD_DTL_MODE == 'UCX' ]]; then | |
| spack spec [email protected] | |
| fi | |
| - name: Install dependencies | |
| run: | | |
| mkdir -p ${DYAD_INSTALL_PREFIX} | |
| python3 -m venv ${DYAD_INSTALL_PREFIX} | |
| . ${SPACK_DIR}/share/spack/setup-env.sh | |
| spack install -j4 flux-core@${FLUX_VERSION} | |
| if [[ $DYAD_DTL_MODE == 'UCX' ]]; then | |
| spack install -j4 [email protected] | |
| fi | |
| if [[ $DYAD_PROFILER_MODE == 'CALIPER' ]]; then | |
| spack install -j4 caliper | |
| fi | |
| spack install cpp-logger@develop | |
| spack view --verbose symlink ${DYAD_INSTALL_PREFIX} flux-core@${FLUX_VERSION} cpp-logger@develop | |
| if [[ $DYAD_DTL_MODE == 'UCX' ]]; then | |
| spack view --verbose symlink ${DYAD_INSTALL_PREFIX} [email protected] | |
| fi | |
| if [[ $DYAD_PROFILER_MODE == 'CALIPER' ]]; then | |
| spack view --verbose symlink ${DYAD_INSTALL_PREFIX} caliper | |
| fi | |
| - name: Compile DYAD | |
| run: | | |
| echo "Activating spack" | |
| . ${SPACK_DIR}/share/spack/setup-env.sh | |
| echo "Install DYAD" | |
| cd ${GITHUB_WORKSPACE} | |
| ls | |
| pwd | |
| mkdir build | |
| cd build | |
| export PKG_CONFIG_PATH=$PKG_CONFIG_PATH:${DYAD_INSTALL_PREFIX}/lib/pkgconfig | |
| CONFIGURE_FLAGS="-DDYAD_PROFILER=NONE" | |
| if [[ $DYAD_DTL_MODE == 'UCX' ]]; then | |
| CONFIGURE_FLAGS="-DDYAD_ENABLE_UCX_DATA=ON -DDYAD_PROFILER=NONE" | |
| fi | |
| TEST_CONF="-DDYAD_LIBDIR_AS_LIB:BOOL=ON -DCMAKE_BUILD_TYPE=Debug -DDYAD_LOGGER=CPP_LOGGER -DDYAD_LOGGER_LEVEL=DEBUG" | |
| cmake --version | |
| cmake -DCMAKE_INSTALL_PREFIX=${DYAD_INSTALL_PREFIX} ${CONFIGURE_FLAGS} ${TEST_CONF} .. | |
| make VERBOSE=1 install -j | |
| - name: Install PyDYAD | |
| run: | | |
| source ${DYAD_INSTALL_PREFIX}/bin/activate | |
| cd ${GITHUB_WORKSPACE}/pydyad | |
| pip install -v -e . | |
| cd ${GITHUB_WORKSPACE} | |
| - name: Install Test | |
| run: | | |
| . ${SPACK_DIR}/share/spack/setup-env.sh | |
| export LD_LIBRARY_PATH=${DYAD_INSTALL_PREFIX}/lib:${LD_LIBRARY_PATH} | |
| export CFLAGS="-I${DYAD_INSTALL_PREFIX}/include" | |
| export CXXFLAGS="-I${DYAD_INSTALL_PREFIX}/include" | |
| export LDFLAGS="-L${DYAD_INSTALL_PREFIX}/lib" | |
| cd ${GITHUB_WORKSPACE}/docs/demos/ecp_feb_2023 | |
| make all | |
| - name: Test DYAD with separate FS c | |
| timeout-minutes: 1 | |
| run: | | |
| mkdir -m 775 -p $DYAD_PATH | |
| . ${SPACK_DIR}/share/spack/setup-env.sh | |
| export PATH=${PATH}:${DYAD_INSTALL_PREFIX}/bin:${DYAD_INSTALL_PREFIX}/sbin | |
| export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${DYAD_INSTALL_PREFIX}/lib | |
| echo "Starting flux brokers" | |
| flux start --test-size=2 /bin/bash ${GITHUB_WORKSPACE}/.github/prod-cons/dyad_prod_cons_test.sh "c" | |
| - name: Test DYAD with separate FS cpp | |
| timeout-minutes: 1 | |
| run: | | |
| mkdir -m 775 -p $DYAD_PATH | |
| . ${SPACK_DIR}/share/spack/setup-env.sh | |
| export PATH=${PATH}:${DYAD_INSTALL_PREFIX}/bin:${DYAD_INSTALL_PREFIX}/sbin | |
| export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${DYAD_INSTALL_PREFIX}/lib | |
| echo "Starting flux brokers" | |
| flux start --test-size=2 /bin/bash ${GITHUB_WORKSPACE}/.github/prod-cons/dyad_prod_cons_test.sh "cpp" | |
| - name: Test DYAD with separate FS python | |
| timeout-minutes: 1 | |
| run: | | |
| mkdir -m 775 -p $DYAD_PATH | |
| source ${DYAD_INSTALL_PREFIX}/bin/activate | |
| . ${SPACK_DIR}/share/spack/setup-env.sh | |
| export PATH=${PATH}:${DYAD_INSTALL_PREFIX}/bin:${DYAD_INSTALL_PREFIX}/sbin | |
| export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${DYAD_INSTALL_PREFIX}/lib | |
| echo "Starting flux brokers" | |
| flux start --test-size=2 /bin/bash ${GITHUB_WORKSPACE}/.github/prod-cons/dyad_prod_cons_test.sh "python" | |
| #- name: Test DYAD with DLIO benchmark | |
| # timeout-minutes: 10 | |
| # run: | | |
| #mkdir -m 775 -p $DYAD_PATH | |
| #source ${DYAD_INSTALL_PREFIX}/bin/activate | |
| #. ${SPACK_DIR}/share/spack/setup-env.sh | |
| #export PATH=${PATH}:${DYAD_INSTALL_PREFIX}/bin:${DYAD_INSTALL_PREFIX}/sbin | |
| #export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${DYAD_INSTALL_PREFIX}/lib | |
| #export PYTHONPATH=${GITHUB_WORKSPACE}/tests/integration/dlio_benchmark:${GITHUB_WORKSPACE}/pydyad:$PYTHONPATH | |
| #pip install -v -r ${GITHUB_WORKSPACE}/tests/integration/dlio_benchmark/requirements.txt | |
| #echo "Starting flux brokers" | |
| #cd ${GITHUB_WORKSPACE}/tests/integration/dlio_benchmark | |
| #flux start --test-size=2 /bin/bash ./script.sh ${GITHUB_WORKSPACE} ${DYAD_INSTALL_PREFIX} | |