pegs-0.6.6

PEGS 0.6.6

Patch release:

• Fix continuous integration testing workflow in Github Actions to work with Python 3.6.
• Pin required version of xlsxwriter to 3.1.9, and fix associated bug when creating XLSX files with TADS using this version.
• Fix documentation generation on ReadTheDocs.
• Add CITATION.cff file to GitHub repository (adds citation information to the repository front page).

pegs-0.6.5

PEGS 0.6.5

Patch release:

• Always use the Agg matplotlib backend (to avoid problems with systems where DISPLAY environment variable is set but no graphical
  display is available.
• Update documentation for mk_pegs_intervals to clarify how to obtain suitable input files.

pegs-0.6.4

PEGS 0.6.4

Patch release:

• Update the citation information following publication of supporting paper on F1000Research (https://f1000research.com/articles/10-570/v2)

pegs-0.6.3

PEGS 0.6.3

Patch release:

• Patches to improve handling of input files: fix problems with sorting filenames, and perform explicit checks on peaks and cluster files to ensure that they exist and are not actually directories.
• Update the Conda installation instructions in the README and documentation.

pegs-0.6.2

PEGS 0.6.2

Patch release:

• Update the README and "getting started" documentation to include installation from Conda.

pegs-0.6.1

PEGS 0.6.1

Patch release:

• Patches to update the README and glucocorticoid examples to reflect the new command line format introduced in version 0.6.0.

pegs-0.6.0

PEGS 0.6.0

This version includes updates that are not backwards compatible with older versions of PEGS

• Substantial update to how input files and distances are specified:
  • New compulsory --peaks and --genes arguments must now be used to specify one or more peakset and gene cluster files respectively.
  • Distance intervals must be specified with new --distances option.
• New options added to customise the output heatmaps:
  • --x-label and --y-label options allow custom axis labels to be specified.
  • Documentation on setting custom colours for heatmap has been expanded (along with examples).
  • Heatmap image format can be specified on the command line either implicitly (via output file name extension) or explicitly (using --format option). Supports PNG, SVG, PDF etc.
• Added information on how to cite PEGS.

pegs-0.5.1

PEGS 0.5.1

Patch release:

• Patches to fix display of README landing page on PyPI and include the changelog in the documentation.