notebooks: fix issue where we didn't turn format string into object

flatironinstitute · Aug 6, 2024 · abe767a · abe767a
1 parent 21fe61e
commit abe767a
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Showing 13 changed files with 13 additions and 13 deletions.
diff --git a/demos/notebooks/demo_OnACID_mesoscope.ipynb b/demos/notebooks/demo_OnACID_mesoscope.ipynb
@@ -37,7 +37,7 @@
     "logfile = None # Replace with a path if you want to log to a file\n",
     "logger = logging.getLogger('caiman')\n",
     "logger.setLevel(logging.INFO)\n",
-    "logfmt = '%(relativeCreated)12d [%(filename)s:%(funcName)20s():%(lineno)s] [%(process)d] %(message)s'\n",
+    "logfmt = logging.Formatter('%(relativeCreated)12d [%(filename)s:%(funcName)20s():%(lineno)s] [%(process)d] %(message)s')\n",
     "if logfile is not None:\n",
     "    handler = logging.FileHandler(logfile)\n",
     "else:\n",

diff --git a/demos/notebooks/demo_Ring_CNN.ipynb b/demos/notebooks/demo_Ring_CNN.ipynb
@@ -26,7 +26,7 @@
     "logfile = None # Replace with a path if you want to log to a file\n",
     "logger = logging.getLogger('caiman')\n",
     "logger.setLevel(logging.INFO)\n",
-    "logfmt = '%(relativeCreated)12d [%(filename)s:%(funcName)20s():%(lineno)s] [%(process)d] %(message)s'\n",
+    "logfmt = logging.Formatter('%(relativeCreated)12d [%(filename)s:%(funcName)20s():%(lineno)s] [%(process)d] %(message)s')\n",
     "if logfile is not None:\n",
     "    handler = logging.FileHandler(logfile)\n",
     "else:\n",

diff --git a/demos/notebooks/demo_VST.ipynb b/demos/notebooks/demo_VST.ipynb
@@ -27,7 +27,7 @@
     "logfile = None # Replace with a path if you want to log to a file\n",
     "logger = logging.getLogger('caiman')\n",
     "logger.setLevel(logging.INFO)\n",
-    "logfmt = '%(relativeCreated)12d [%(filename)s:%(funcName)20s():%(lineno)s] [%(process)d] %(message)s'\n",
+    "logfmt = logging.Formatter('%(relativeCreated)12d [%(filename)s:%(funcName)20s():%(lineno)s] [%(process)d] %(message)s')\n",
     "if logfile is not None:\n",
     "    handler = logging.FileHandler(logfile)\n",
     "else:\n",

diff --git a/demos/notebooks/demo_caiman_cnmf_3D.ipynb b/demos/notebooks/demo_caiman_cnmf_3D.ipynb
@@ -42,7 +42,7 @@
     "logfile = None # Replace with a path if you want to log to a file\n",
     "logger = logging.getLogger('caiman')\n",
     "logger.setLevel(logging.INFO)\n",
-    "logfmt = '%(relativeCreated)12d [%(filename)s:%(funcName)20s():%(lineno)s] [%(process)d] %(message)s'\n",
+    "logfmt = logging.Formatter('%(relativeCreated)12d [%(filename)s:%(funcName)20s():%(lineno)s] [%(process)d] %(message)s')\n",
     "if logfile is not None:\n",
     "    handler = logging.FileHandler(logfile)\n",
     "else:\n",

diff --git a/demos/notebooks/demo_dendritic.ipynb b/demos/notebooks/demo_dendritic.ipynb
@@ -71,7 +71,7 @@
     "    log_file = None\n",
     "logger = logging.getLogger('caiman')\n",
     "logger.setLevel(logging.INFO)\n",
-    "logfmt = '%(relativeCreated)12d [%(filename)s:%(funcName)20s():%(lineno)s] [%(process)d] %(message)s'\n",
+    "logfmt = logging.Formatter('%(relativeCreated)12d [%(filename)s:%(funcName)20s():%(lineno)s] [%(process)d] %(message)s')\n",
     "if log_file is not None:\n",
     "    handler = logging.FileHandler(log_file)\n",
     "else:\n",

diff --git a/demos/notebooks/demo_motion_correction.ipynb b/demos/notebooks/demo_motion_correction.ipynb
@@ -43,7 +43,7 @@
     "logfile = None # Replace with a path if you want to log to a file\n",
     "logger = logging.getLogger('caiman')\n",
     "logger.setLevel(logging.INFO)\n",
-    "logfmt = '%(relativeCreated)12d [%(filename)s:%(funcName)20s():%(lineno)s] [%(process)d] %(message)s'\n",
+    "logfmt = logging.Formatter('%(relativeCreated)12d [%(filename)s:%(funcName)20s():%(lineno)s] [%(process)d] %(message)s')\n",
     "if logfile is not None:\n",
     "    handler = logging.FileHandler(logfile)\n",
     "else:\n",

diff --git a/demos/notebooks/demo_online_3D.ipynb b/demos/notebooks/demo_online_3D.ipynb
@@ -39,7 +39,7 @@
     "logfile = None # Replace with a path if you want to log to a file\n",
     "logger = logging.getLogger('caiman')\n",
     "logger.setLevel(logging.WARNING)\n",
-    "logfmt = '%(relativeCreated)12d [%(filename)s:%(funcName)20s():%(lineno)s] [%(process)d] %(message)s'\n",
+    "logfmt = logging.Formatter('%(relativeCreated)12d [%(filename)s:%(funcName)20s():%(lineno)s] [%(process)d] %(message)s')\n",
     "if logfile is not None:\n",
     "    handler = logging.FileHandler(logfile)\n",
     "else:\n",

diff --git a/demos/notebooks/demo_online_cnmfE.ipynb b/demos/notebooks/demo_online_cnmfE.ipynb
@@ -39,7 +39,7 @@
     "logfile = None # Replace with a path if you want to log to a file\n",
     "logger = logging.getLogger('caiman')\n",
     "logger.setLevel(logging.WARNING)\n",
-    "logfmt = '%(relativeCreated)12d [%(filename)s:%(funcName)20s():%(lineno)s] [%(process)d] %(message)s'\n",
+    "logfmt = logging.Formatter('%(relativeCreated)12d [%(filename)s:%(funcName)20s():%(lineno)s] [%(process)d] %(message)s')\n",
     "if logfile is not None:\n",
     "    handler = logging.FileHandler(logfile)\n",
     "else:\n",

diff --git a/demos/notebooks/demo_pipeline.ipynb b/demos/notebooks/demo_pipeline.ipynb
@@ -96,7 +96,7 @@
     "logfile = None # Replace with a path if you want to log to a file\n",
     "logger = logging.getLogger('caiman')\n",
     "logger.setLevel(logging.WARNING)\n",
-    "logfmt = '%(relativeCreated)12d [%(filename)s:%(funcName)20s():%(lineno)s] [%(process)d] %(message)s'\n",
+    "logfmt = logging.Formatter('%(relativeCreated)12d [%(filename)s:%(funcName)20s():%(lineno)s] [%(process)d] %(message)s')\n",
     "if logfile is not None:\n",
     "    handler = logging.FileHandler(logfile)\n",
     "else:\n",

diff --git a/demos/notebooks/demo_pipeline_cnmfE.ipynb b/demos/notebooks/demo_pipeline_cnmfE.ipynb
@@ -86,7 +86,7 @@
     "logfile = None # Replace with a path if you want to log to a file\n",
     "logger = logging.getLogger('caiman')\n",
     "logger.setLevel(logging.WARNING)\n",
-    "logfmt = '%(relativeCreated)12d [%(filename)s:%(funcName)20s():%(lineno)s] [%(process)d] %(message)s'\n",
+    "logfmt = logging.Formatter('%(relativeCreated)12d [%(filename)s:%(funcName)20s():%(lineno)s] [%(process)d] %(message)s')\n",
     "if logfile is not None:\n",
     "    handler = logging.FileHandler(logfile)\n",
     "else:\n",

diff --git a/demos/notebooks/demo_pipeline_voltage_imaging.ipynb b/demos/notebooks/demo_pipeline_voltage_imaging.ipynb
@@ -63,7 +63,7 @@
     "logfile = None # Replace with a path if you want to log to a file\n",
     "logger = logging.getLogger('caiman')\n",
     "logger.setLevel(logging.ERROR)\n",
-    "logfmt = '%(relativeCreated)12d [%(filename)s:%(funcName)20s():%(lineno)s] [%(process)d] %(message)s'\n",
+    "logfmt = logging.Formatter('%(relativeCreated)12d [%(filename)s:%(funcName)20s():%(lineno)s] [%(process)d] %(message)s')\n",
     "if logfile is not None:\n",
     "    handler = logging.FileHandler(logfile)\n",
     "else:\n",

diff --git a/demos/notebooks/demo_realtime_cnmfE.ipynb b/demos/notebooks/demo_realtime_cnmfE.ipynb
@@ -54,7 +54,7 @@
     "logfile = None # Replace with a path if you want to log to a file\n",
     "logger = logging.getLogger('caiman')\n",
     "logger.setLevel(logging.WARNING)\n",
-    "logfmt = '%(relativeCreated)12d [%(filename)s:%(funcName)20s():%(lineno)s] [%(process)d] %(message)s'\n",
+    "logfmt = logging.Formatter('%(relativeCreated)12d [%(filename)s:%(funcName)20s():%(lineno)s] [%(process)d] %(message)s')\n",
     "if logfile is not None:\n",
     "    handler = logging.FileHandler(logfile)\n",
     "else:\n",

diff --git a/demos/notebooks/demo_seeded_CNMF.ipynb b/demos/notebooks/demo_seeded_CNMF.ipynb
@@ -48,7 +48,7 @@
     "logfile = None # Replace with a path if you want to log to a file\n",
     "logger = logging.getLogger('caiman')\n",
     "logger.setLevel(logging.WARNING)\n",
-    "logfmt = '%(relativeCreated)12d [%(filename)s:%(funcName)20s():%(lineno)s] [%(process)d] %(message)s'\n",
+    "logfmt = logging.Formatter('%(relativeCreated)12d [%(filename)s:%(funcName)20s():%(lineno)s] [%(process)d] %(message)s')\n",
     "if logfile is not None:\n",
     "    handler = logging.FileHandler(logfile)\n",
     "else:\n",