Skip to content

Commit

Permalink
Render Leanpub
Browse files Browse the repository at this point in the history
  • Loading branch information
jhudsl-robot committed Mar 6, 2024
1 parent b8474fa commit 0aaa422
Show file tree
Hide file tree
Showing 62 changed files with 529 additions and 0 deletions.
7 changes: 7 additions & 0 deletions manuscript/1-Video-Introduction.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,7 @@
# 1 Video Introduction

{type: iframe, title:1 Video Introduction, width:800, height:600, poster:resources/chapt_screen_images/video-introduction.png}
![](https://hutchdatascience.org/NIH_Data_Sharing/no_toc/video-introduction.html)



7 changes: 7 additions & 0 deletions manuscript/10-Budgeting-for-Data-Sharing.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,7 @@
# 10 Budgeting for Data Sharing

{type: iframe, title:10 Budgeting for Data Sharing, width:800, height:600, poster:resources/chapt_screen_images/budgeting-for-data-sharing.png}
![](https://hutchdatascience.org/NIH_Data_Sharing/no_toc/budgeting-for-data-sharing.html)



7 changes: 7 additions & 0 deletions manuscript/11-Writing-a-DMS-Plan.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,7 @@
# 11 Writing a DMS Plan

{type: iframe, title:11 Writing a DMS Plan, width:800, height:600, poster:resources/chapt_screen_images/writing-a-dms-plan.png}
![](https://hutchdatascience.org/NIH_Data_Sharing/no_toc/writing-a-dms-plan.html)



7 changes: 7 additions & 0 deletions manuscript/12-Presubmission-Tips.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,7 @@
# 12 Presubmission Tips

{type: iframe, title:12 Presubmission Tips, width:800, height:600, poster:resources/chapt_screen_images/presubmission-tips.png}
![](https://hutchdatascience.org/NIH_Data_Sharing/no_toc/presubmission-tips.html)



7 changes: 7 additions & 0 deletions manuscript/13-Post-Submission-Tips.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,7 @@
# 13 Post Submission Tips

{type: iframe, title:13 Post Submission Tips, width:800, height:600, poster:resources/chapt_screen_images/post-submission-tips.png}
![](https://hutchdatascience.org/NIH_Data_Sharing/no_toc/post-submission-tips.html)



7 changes: 7 additions & 0 deletions manuscript/14-Video-Creating-Your-Plan-Wrap-Up.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,7 @@
# 14 Video Creating Your Plan Wrap Up

{type: iframe, title:14 Video Creating Your Plan Wrap Up, width:800, height:600, poster:resources/chapt_screen_images/video-creating-your-plan-wrap-up.png}
![](https://hutchdatascience.org/NIH_Data_Sharing/no_toc/video-creating-your-plan-wrap-up.html)



7 changes: 7 additions & 0 deletions manuscript/15-Video-Course-Wrap-Up.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,7 @@
# 15 Video Course Wrap Up

{type: iframe, title:15 Video Course Wrap Up, width:800, height:600, poster:resources/chapt_screen_images/video-course-wrap-up.png}
![](https://hutchdatascience.org/NIH_Data_Sharing/no_toc/video-course-wrap-up.html)



7 changes: 7 additions & 0 deletions manuscript/2-Why-This-New-DMS-Policy.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,7 @@
# 2 Why This New DMS Policy

{type: iframe, title:2 Why This New DMS Policy, width:800, height:600, poster:resources/chapt_screen_images/why-this-new-dms-policy.png}
![](https://hutchdatascience.org/NIH_Data_Sharing/no_toc/why-this-new-dms-policy.html)



7 changes: 7 additions & 0 deletions manuscript/3-Discussion-on-Benefits-of-Data-Sharing.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,7 @@
# 3 Discussion on Benefits of Data Sharing

{type: iframe, title:3 Discussion on Benefits of Data Sharing, width:800, height:600, poster:resources/chapt_screen_images/discussion-on-benefits-of-data-sharing.png}
![](https://hutchdatascience.org/NIH_Data_Sharing/no_toc/discussion-on-benefits-of-data-sharing.html)



7 changes: 7 additions & 0 deletions manuscript/4-Video-Your-Considerations.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,7 @@
# 4 Video Your Considerations

{type: iframe, title:4 Video Your Considerations, width:800, height:600, poster:resources/chapt_screen_images/video-your-considerations.png}
![](https://hutchdatascience.org/NIH_Data_Sharing/no_toc/video-your-considerations.html)



7 changes: 7 additions & 0 deletions manuscript/5-How-Will-This-Policy-Affect-Me.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,7 @@
# 5 How Will This Policy Affect Me

{type: iframe, title:5 How Will This Policy Affect Me, width:800, height:600, poster:resources/chapt_screen_images/how-will-this-policy-affect-me.png}
![](https://hutchdatascience.org/NIH_Data_Sharing/no_toc/how-will-this-policy-affect-me.html)



7 changes: 7 additions & 0 deletions manuscript/6-Video-Introduction-Wrap-Up.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,7 @@
# 6 Video Introduction Wrap Up

{type: iframe, title:6 Video Introduction Wrap Up, width:800, height:600, poster:resources/chapt_screen_images/video-introduction-wrap-up.png}
![](https://hutchdatascience.org/NIH_Data_Sharing/no_toc/video-introduction-wrap-up.html)



7 changes: 7 additions & 0 deletions manuscript/7-Video-Creating-Your-Plan.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,7 @@
# 7 Video Creating Your Plan

{type: iframe, title:7 Video Creating Your Plan, width:800, height:600, poster:resources/chapt_screen_images/video-creating-your-plan.png}
![](https://hutchdatascience.org/NIH_Data_Sharing/no_toc/video-creating-your-plan.html)



7 changes: 7 additions & 0 deletions manuscript/8-Overview-of-the-DMS-Plan.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,7 @@
# 8 Overview of the DMS Plan

{type: iframe, title:8 Overview of the DMS Plan, width:800, height:600, poster:resources/chapt_screen_images/overview-of-the-dms-plan.png}
![](https://hutchdatascience.org/NIH_Data_Sharing/no_toc/overview-of-the-dms-plan.html)



7 changes: 7 additions & 0 deletions manuscript/9-Data-Management-and-Storage.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,7 @@
# 9 Data Management and Storage

{type: iframe, title:9 Data Management and Storage, width:800, height:600, poster:resources/chapt_screen_images/data-management-and-storage.png}
![](https://hutchdatascience.org/NIH_Data_Sharing/no_toc/data-management-and-storage.html)



7 changes: 7 additions & 0 deletions manuscript/About-the-Authors.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,7 @@
# About the Authors

{type: iframe, title:About the Authors, width:800, height:600, poster:resources/chapt_screen_images/about-the-authors.png}
![](https://hutchdatascience.org/NIH_Data_Sharing/no_toc/about-the-authors.html)



7 changes: 7 additions & 0 deletions manuscript/About-this-Course.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,7 @@
# About this Course

{type: iframe, title:About this Course, width:800, height:600, poster:resources/chapt_screen_images/index.png}
![](https://hutchdatascience.org/NIH_Data_Sharing/no_toc/index.html)



7 changes: 7 additions & 0 deletions manuscript/Additional-Resources.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,7 @@
# Additional Resources

{type: iframe, title:Additional Resources, width:800, height:600, poster:resources/chapt_screen_images/additional-resources.png}
![](https://hutchdatascience.org/NIH_Data_Sharing/no_toc/additional-resources.html)



19 changes: 19 additions & 0 deletions manuscript/Book.txt
Original file line number Diff line number Diff line change
@@ -0,0 +1,19 @@
About-this-Course.md
1-Why-this-new-DMS-policy.md
2-How-will-this-policy-affect-me.md
quiz_1.md
3-Overview-of-the-DMS-Plan.md
4-Data-Management-and-Storage.md
5-Budgeting-for-Data-Sharing.md
6-Writing-a-DMS-Plan.md
quiz_2.md
7-Presubmission-Tips.md
8-Post-Submission-Tips.md
FAQ.md
Additional-Resources.md
Further-Reading.md
Tools-Used-for-This-Course.md
Data-File-Size-Details.md
Ethical-Considerations.md
About-the-Authors.md
References.md
7 changes: 7 additions & 0 deletions manuscript/Course-Overview.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,7 @@
# Course Overview

{type: iframe, title:Course Overview, width:800, height:600, poster:resources/chapt_screen_images/course-overview.png}
![](https://hutchdatascience.org/NIH_Data_Sharing/no_toc/course-overview.html)



7 changes: 7 additions & 0 deletions manuscript/Data-File-Size-Details.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,7 @@
# Data File Size Details

{type: iframe, title:Data File Size Details, width:800, height:600, poster:resources/chapt_screen_images/data-file-size-details.png}
![](https://hutchdatascience.org/NIH_Data_Sharing/no_toc/data-file-size-details.html)



7 changes: 7 additions & 0 deletions manuscript/Ethical-Considerations.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,7 @@
# Ethical Considerations

{type: iframe, title:Ethical Considerations, width:800, height:600, poster:resources/chapt_screen_images/ethics.png}
![](https://hutchdatascience.org/NIH_Data_Sharing/no_toc/ethics.html)



7 changes: 7 additions & 0 deletions manuscript/FAQ.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,7 @@
# FAQ

{type: iframe, title:FAQ, width:800, height:600, poster:resources/chapt_screen_images/faq.png}
![](https://hutchdatascience.org/NIH_Data_Sharing/no_toc/faq.html)



7 changes: 7 additions & 0 deletions manuscript/Format-and-Audience.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,7 @@
# Format and Audience

{type: iframe, title:Format and Audience, width:800, height:600, poster:resources/chapt_screen_images/format-and-audience.png}
![](https://hutchdatascience.org/NIH_Data_Sharing/no_toc/format-and-audience.html)



7 changes: 7 additions & 0 deletions manuscript/Further-Reading.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,7 @@
# Further Reading

{type: iframe, title:Further Reading, width:800, height:600, poster:resources/chapt_screen_images/further-reading.png}
![](https://hutchdatascience.org/NIH_Data_Sharing/no_toc/further-reading.html)



7 changes: 7 additions & 0 deletions manuscript/Learning-Objectives.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,7 @@
# Learning Objectives

{type: iframe, title:Learning Objectives, width:800, height:600, poster:resources/chapt_screen_images/learning-objectives.png}
![](https://hutchdatascience.org/NIH_Data_Sharing/no_toc/learning-objectives.html)



7 changes: 7 additions & 0 deletions manuscript/References.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,7 @@
# References

{type: iframe, title:References, width:800, height:600, poster:resources/chapt_screen_images/references.png}
![](https://hutchdatascience.org/NIH_Data_Sharing/no_toc/references.html)



7 changes: 7 additions & 0 deletions manuscript/Tools-Used-for-This-Course.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,7 @@
# Tools Used for This Course

{type: iframe, title:Tools Used for This Course, width:800, height:600, poster:resources/chapt_screen_images/tools-used-for-this-course.png}
![](https://hutchdatascience.org/NIH_Data_Sharing/no_toc/tools-used-for-this-course.html)



7 changes: 7 additions & 0 deletions manuscript/Video-Summary.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,7 @@
# Video Summary

{type: iframe, title:Video Summary, width:800, height:600, poster:resources/chapt_screen_images/video-summary.png}
![](https://hutchdatascience.org/NIH_Data_Sharing/no_toc/video-summary.html)



59 changes: 59 additions & 0 deletions manuscript/quiz_1a.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,59 @@

{quiz, id: introduction, attempts: 10}

## Introduction Quiz

Choose the best answer for the following questions.

{choose-answers: 4}
? What is one of the benefits of data sharing mentioned in the Introduction?

C) Increased collaboration opportunities
C) Improved reproducibility and rigor
C) Generally greater impact and benefit for society
C) A greater number of citations to articles
m) Decreased transparency in research
m) Limited reproducibility of study findings
o) Data storage costs covered by the federal government
o) Scientific analysis is limited to experts in the field

{choose-answers: 4}
? Is a DMS plan is required?

m) Yes, all grant mechanisms require a DMS plan
C) Maybe, look up the NIH Activity Code to see if you are required to submit a DMS Plan
m) No, the DMS plan is optional, but can improve your grant score
m) Yes, ask the Office of Sponsored Research for your institution to prepare a plan

{choose-answers: 4}
? Which of the following is NOT considered scientific data under the NIH Data Management and Sharing (DMS) Policy?

m) Unpublished results
m) Null results
C) Lab notebooks
C) Plans for future research
C) Peer reviews
m) Results used to publish papers

{choose-answers: 4}
? Which of the following is FALSE regarding the grant review process and your DMS Plan?

m) Reviewers will not have access to your DMS plan
m) Reviewers will see your budget which will include some descriptions of how money will be spent to manage and share data
m) DMS plan should not influence your grant score
C) The Program Officer will write the DMS plan and will work with the PI to address any concerns
C) The Program Officer will score the plan and add the value to your grant score
C) There is no opportunity for updates to the plan during the Just-in-Time procedures

{choose-answers: 4}
? What are some justifiable reasons for limiting data sharing?

o) Data is considered too small and won't be widely used
o) Researchers anticipate the data won't have a suitable repository
C) Existing consent prohibits sharing or limits the scope of sharing
C) Explicit federal, state, local, or Tribal law, regulation, or policy prohibits disclosure
o) Researchers don't have the right personnel to manage and share data
o) You want to upgrade your lab equipment instead of paying for data storage
o) You want to conduct a follow up analysis in a few years

{/quiz}
49 changes: 49 additions & 0 deletions manuscript/quiz_1b.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,49 @@

{quiz, id: introduction, attempts: 10}

## Introduction Quiz 2

Choose the best answer for the following questions.

{choose-answers: 4}
? What is the primary motivation behind the new data management and sharing (DMS) policy introduced by the NIH?

m) To increase paperwork for researchers
m) To restrict access to scientific data
C) To promote transparency and reproducibility in research
m) To decrease collaboration opportunities

{choose-answers: 4}
? Which of the following is NOT listed as a benefit of data sharing according to the text?

m) Transparency
m) Efficiency and cost-effectiveness
C) Limiting collaboration opportunities
C) Sharing sensitive data
m) Researcher inclusion

{choose-answers: 4}
? What does the term "scientific data" refer to?

m) Lab notebooks and preliminary analyses
m) Case report forms and peer reviews
C) Recorded factual material used to validate and replicate research findings
m) Plans for future research and communications with colleagues

{choose-answers: 4}
? Under what circumstances is it permissible to not share data according to the new DMS policy?

m) If the data are considered too small
m) If the researcher doesn't have the right personnel to manage data
C) If there are legal or ethical concerns, and appropriate justification is provided
m) If the researcher anticipates that the data will not be widely used

{choose-answers: 4}
? What action should be taken if a researcher anticipates that data cannot be shared due to legal or ethical concerns?

m) Submit the grant proposal without addressing the issue
C) Provide a justification in the DMS plan
m) Avoid mentioning the issue in the proposal
m) Seek approval from the NIH after the grant is awarded

{/quiz}
Loading

0 comments on commit 0aaa422

Please sign in to comment.