fixo

fgcz · Sep 3, 2024 · dcb1333 · dcb1333
1 parent 505f874
commit dcb1333
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Showing 2 changed files with 1 addition and 6 deletions.
diff --git a/R/LFQDataPlotter.R b/R/LFQDataPlotter.R
@@ -12,13 +12,13 @@
 #'  istar$data,
 #'  istar$config)
 #' #LFQDataPlotter$debug("boxplots")
+#' LFQDataPlotter$debug("pairs_smooth")
 #' lfqplotter <- lfqdata$get_Plotter()
 #'
 #' stopifnot(class(lfqplotter$heatmap()) == "pheatmap")
 #' stopifnot(class(lfqplotter$heatmap_cor()) == "pheatmap")
 #' stopifnot("ggplot" %in% class(lfqplotter$pca()))
 #' stopifnot("plotly" %in%  class(lfqplotter$pca_plotly()))
-#'
 #' tmp <- lfqplotter$boxplots()
 #' stopifnot("ggplot" %in%  class(tmp$boxplot[[1]]))
 #' stopifnot("ggplot" %in% class(lfqplotter$missigness_histogram()))

diff --git a/R/utilities.R b/R/utilities.R
@@ -460,11 +460,6 @@ panel_cor <- function(x, y, digits = 2, ...)
 #' pairs_smooth(tmp,log="xy",main="small data", legend=TRUE)
 #' @seealso also \code{\link{pairs}}
 pairs_smooth <- function(data, legend = FALSE, ...) {
-  while (nrow(na.omit(data)) < 100) {
-    non_na_counts <- apply(data, 2, function(x) sum(!is.na(x)))
-    min_col <- which.min(non_na_counts)
-    data <- data[, -min_col, drop = FALSE]
-  }
 
   pairs(
     data,