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fgcz · Apr 6, 2024 · 089b863 · 089b863
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Showing 2 changed files with 1 addition and 5 deletions.
diff --git a/R/ContrastsSimpleImpute.R b/R/ContrastsSimpleImpute.R
@@ -89,7 +89,7 @@ ContrastsMissing <- R6::R6Class(
       # extract contrast sides
       tt <- self$contrasts[grep("-",self$contrasts)]
       tt <- tibble(contrast = names(tt) , rhs = tt)
-      tt <- tt |> mutate(rhs = gsub("[` ]","",rhs)) |>
+      tt <- tt |> dplyr::mutate(rhs = gsub("[` ]","",rhs)) |>
         tidyr::separate(rhs, c("group_1", "group_2"), sep = "-")
       return(tt)
     },

diff --git a/R/tidyMS_missigness.R b/R/tidyMS_missigness.R
@@ -414,13 +414,9 @@ get_contrast <- function(data,
 #' config <- istar$config
 #' analysis <- istar$data
 #' data <- complete_cases(analysis, config)
-#' config$parameter$qVal_individual_threshold <- 0.01
-#' data <- prolfqua::remove_large_QValues(data, config)
-#' data <- complete_cases(data, config)
 #'
 #' Contrasts <- c("dilution.b-a" = "group_A - group_B", "dilution.c-e" = "group_A - group_Ctrl")
 #' res <- get_imputed_contrasts(data, config, Contrasts)
-#'
 #' config <- config
 #' contrasts <- Contrasts
 #' imputed <- missigness_impute_factors_interactions(data, config, value = "imputed" )