change structure of for loop in estimate_intensity to simplify debugging #754

	name: R-CMD-check-prolfqua
	env:
	ACTIONS_ALLOW_UNSECURE_COMMANDS: 'true'
	R_LIBS_SITE: '/home/runner/work/_temp/Library/'
	on:
	push:
	branches: [ Modelling2R6 ]
	pull_request:
	branches: [ Modelling2R6 ]
	jobs:
	build:
	runs-on: ubuntu-20.04
	strategy:
	matrix:
	r-version: [4.4.0]
	steps:
	- uses: actions/checkout@v2

	- name: Set up R ${{ matrix.r-version }}
	uses: r-lib/actions/setup-r@v1
	with:
	r-version: ${{ matrix.r-version }}
	- name: Install Linux packages
	run: sudo apt-get install -y unzip curl libcurl4-openssl-dev libicu-dev pandoc wget unzip texlive texlive-latex-extra texlive-fonts-extra texlive-xetex pandoc-citeproc lmodern
	- name: install remotes
	run: install.packages(c("remotes","rcmdcheck","covr","ggpubr"))
	shell: Rscript {0}
	- name: install local prolfqua
	run: remotes::install_local('.', dependencies = TRUE)
	shell: Rscript {0}
	- name: rcmdcheck::rcmdcheck
	run: rcmdcheck::rcmdcheck(error_on = "never", check_dir = "check")
	shell: Rscript {0}
	- name: codecov
	run: covr::codecov(type = "all", token=Sys.getenv('CODECOV_TOKEN'))
	shell: Rscript {0}
	- name: List files in home directory
	run: find $R_LIBS_SITE -type f > files.txt
	- uses: actions/upload-artifact@v2
	with:
	name: files
	path: files.txt
	if-no-files-found: warn

	- uses: actions/upload-artifact@v2
	with:
	name: prolfqua CI Rcheck directory
	path: check/prolfqua.Rcheck
	if-no-files-found: warn
	# - uses: actions/upload-artifact@v2
	# with:
	# name: R_LIBS_SITE directory
	# path: /home/runner/work/_temp/Library/
	# if-no-files-found: warn

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