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fcaretti · Jun 14, 2024 · 02f308d · 02f308d
1 parent cb1e883
commit 02f308d
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Showing 2 changed files with 5 additions and 5 deletions.
diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
@@ -51,12 +51,12 @@ jobs:
     - name: Test workflow
       uses: snakemake/[email protected]
       with:
-        directory: .test
-        snakefile: workflow/Snakefile
+        directory: '.test'
+        snakefile: 'workflow/Snakefile'
         args: "--dry-run --use-conda --show-failed-logs --cores 3 --conda-cleanup-pkgs cache --all-temp"
     - name: Test report
       uses: snakemake/[email protected]
       with:
-        directory: .
-        snakefile: workflow/Snakefile
+        directory: '.'
+        snakefile: 'workflow/Snakefile'
         args: "--report report.zip"
diff --git a/workflow/Snakefile b/workflow/Snakefile
@@ -2,7 +2,7 @@ import glob
 import os
 
 
-configfile: "config/config.yml"
+configfile: ".test/config/config.yml"
 
 
 # Access the data folder from the config