Fix issue with SQA storage never removing Data objects + upgrade testing for scheduler with MapData intermediate results

ax/service/tests/scheduler_test_utils.py

@@ -7,7 +7,7 @@
 # pyre-strict
 
 import os
-from datetime import timedelta
+from datetime import datetime, timedelta
 from logging import WARNING
 from math import ceil
 from random import randint
@@ -76,6 +76,7 @@
     SpecialGenerationStrategy,
 )
 from ax.utils.testing.mock import fast_botorch_optimize
+from pyre_extensions import none_throws
 
 from sqlalchemy.orm.exc import StaleDataError
 
@@ -243,6 +244,33 @@ def run_multiple(self, trials: Iterable[BaseTrial]) -> Dict[int, Dict[str, Any]]
         raise RuntimeError("Failing for testing purposes.")
 
 
+class RunnerToAllowMultipleMapMetricFetches(SyntheticRunnerWithStatusPolling):
+    """``Runner`` that gives a trial 3 seconds to run before considering
+    the trial completed, which gives us some time to fetch the ``MapMetric``
+    a few times, if there is one on the experiment. Useful for testing behavior
+    with repeated ``MapMetric`` fetches.
+    """
+
+    def poll_trial_status(
+        self, trials: Iterable[BaseTrial]
+    ) -> Dict[TrialStatus, Set[int]]:
+        running_trials = next(iter(trials)).experiment.trials_by_status[
+            TrialStatus.RUNNING
+        ]
+        completed, still_running = set(), set()
+        for t in running_trials:
+            # pyre-ignore[58]: Operand is actually supported between these
+            if datetime.now() - t.time_run_started > timedelta(seconds=3):
+                completed.add(t.index)
+            else:
+                still_running.add(t.index)
+
+        return {
+            TrialStatus.COMPLETED: completed,
+            TrialStatus.RUNNING: still_running,
+        }
+
+
 class AxSchedulerTestCase(TestCase):
     """Tests base `Scheduler` functionality.  This test case is meant to
     test Scheduler using `GenerationStrategy`, but be extensible so
@@ -281,6 +309,9 @@ def setUp(self) -> None:
         self.branin_timestamp_map_metric_experiment = (
             get_branin_experiment_with_timestamp_map_metric()
         )
+        self.branin_timestamp_map_metric_experiment.runner = (
+            RunnerToAllowMultipleMapMetricFetches()
+        )
 
         self.runner = SyntheticRunnerWithStatusPolling()
         self.branin_experiment.runner = self.runner
@@ -334,6 +365,7 @@ def runner_registry(self) -> Dict[Type[Runner], int]:
             BrokenRunnerRuntimeError: 2006,
             SyntheticRunnerWithSingleRunningTrial: 2007,
             SyntheticRunnerWithPredictableStatusPolling: 2008,
+            RunnerToAllowMultipleMapMetricFetches: 2009,
             **CORE_RUNNER_REGISTRY,
         }
 
@@ -1061,6 +1093,67 @@ def test_sqa_storage_without_experiment_name(self) -> None:
                 db_settings=self.db_settings,
             )
 
+    def test_sqa_storage_map_metric_experiment(self) -> None:
+        init_test_engine_and_session_factory(force_init=True)
+        gs = self._get_generation_strategy_strategy_for_test(
+            experiment=self.branin_timestamp_map_metric_experiment,
+            generation_strategy=self.two_sobol_steps_GS,
+        )
+        self.assertIsNotNone(self.branin_timestamp_map_metric_experiment)
+        NUM_TRIALS = 5
+        scheduler = Scheduler(
+            experiment=self.branin_timestamp_map_metric_experiment,
+            generation_strategy=gs,
+            options=SchedulerOptions(
+                total_trials=NUM_TRIALS,
+                init_seconds_between_polls=0,  # No wait between polls so test is fast.
+            ),
+            db_settings=self.db_settings,
+        )
+        with patch.object(
+            scheduler.experiment,
+            "attach_data",
+            Mock(wraps=scheduler.experiment.attach_data),
+        ) as mock_experiment_attach_data:
+            # Artificial timestamp logic so we can later check that it's the
+            # last-timestamp data that was preserved after multiple `attach_
+            # data` calls.
+            with patch(
+                f"{Experiment.__module__}.current_timestamp_in_millis",
+                side_effect=lambda: len(
+                    scheduler.experiment.trials_by_status[TrialStatus.COMPLETED]
+                )
+                * 1000
+                + mock_experiment_attach_data.call_count,
+            ):
+                scheduler.run_all_trials()
+        # Check that experiment and GS were saved and test reloading with reduced state.
+        exp, loaded_gs = scheduler._load_experiment_and_generation_strategy(
+            self.branin_timestamp_map_metric_experiment.name, reduced_state=True
+        )
+        exp = none_throws(exp)
+        self.assertEqual(len(exp.trials), NUM_TRIALS)
+
+        # There should only be one data object for each trial, since by default the
+        # `Scheduler` should override previous data objects when it gets new ones in
+        # a subsequent `fetch` call.
+        for _, datas in exp.data_by_trial.items():
+            self.assertEqual(len(datas), 1)
+
+        # We also should have attempted the fetch more times
+        # than there are trials because we have a `MapMetric` (many more since we are
+        # waiting 3 seconds for each trial).
+        self.assertGreater(mock_experiment_attach_data.call_count, NUM_TRIALS * 2)
+
+        # Check that it's the last-attached data that was kept, using
+        # expected value based on logic in mocked "current_timestamp_in_millis"
+        num_attach_calls = mock_experiment_attach_data.call_count
+        expected_ts_last_trial = len(exp.trials) * 1000 + num_attach_calls
+        self.assertEqual(
+            next(iter(exp.data_by_trial[len(exp.trials) - 1])),
+            expected_ts_last_trial,
+        )
+
     def test_sqa_storage_with_experiment_name(self) -> None:
         init_test_engine_and_session_factory(force_init=True)
         gs = self._get_generation_strategy_strategy_for_test(
@@ -1083,10 +1176,11 @@ def test_sqa_storage_with_experiment_name(self) -> None:
             self.branin_experiment.name
         )
         self.assertEqual(exp, self.branin_experiment)
+        exp = none_throws(exp)
         self.assertEqual(
             # pyre-fixme[16]: Add `_generator_runs` back to GSI interface or move
             # interface to node-level from strategy-level (the latter is likely the
-            # better option)
+            # better option) TODO
             len(gs._generator_runs),
             len(not_none(loaded_gs)._generator_runs),
         )
@@ -1095,7 +1189,7 @@ def test_sqa_storage_with_experiment_name(self) -> None:
         exp, loaded_gs = scheduler._load_experiment_and_generation_strategy(
             self.branin_experiment.name, reduced_state=True
         )
-        # pyre-fixme[16]: `Optional` has no attribute `trials`.
+        exp = none_throws(exp)
         self.assertEqual(len(exp.trials), NUM_TRIALS)
         # Because of RGS, gs has queued additional unused candidates
         self.assertGreaterEqual(len(gs._generator_runs), NUM_TRIALS)
@@ -1109,7 +1203,6 @@ def test_sqa_storage_with_experiment_name(self) -> None:
         )
         # Hack "resumed from storage timestamp" into `exp` to make sure all other fields
         # are equal, since difference in resumed from storage timestamps is expected.
-        # pyre-fixme[16]: `Optional` has no attribute `_properties`.
         exp._properties[ExperimentStatusProperties.RESUMED_FROM_STORAGE_TIMESTAMPS] = (
             new_scheduler.experiment._properties[
                 ExperimentStatusProperties.RESUMED_FROM_STORAGE_TIMESTAMPS

ax/storage/sqa_store/save.py

@@ -9,9 +9,10 @@
 import os
 
 from logging import Logger
-from typing import Any, Callable, Dict, List, Optional, Sequence, Union
+from typing import Any, Callable, cast, Dict, List, Optional, Sequence, Type, Union
 
 from ax.core.base_trial import BaseTrial
+from ax.core.data import Data
 from ax.core.experiment import Experiment
 from ax.core.generator_run import GeneratorRun
 from ax.core.metric import Metric
@@ -215,21 +216,19 @@ def _save_or_update_trials(
     will also be added to the experiment, but existing data objects in the
     database will *not* be updated or removed.
     """
-    experiment_id = experiment._db_id
-    if experiment_id is None:
-        raise ValueError("Must save experiment first.")
+    if experiment._db_id is None:
+        raise ValueError("Must save experiment before saving/updating its trials.")
 
-    # pyre-fixme[53]: Captured variable `experiment_id` is not annotated.
-    # pyre-fixme[3]: Return type must be annotated.
-    def add_experiment_id(sqa: Union[SQATrial, SQAData]):
+    experiment_id: int = experiment._db_id
+
+    def add_experiment_id(sqa: Union[SQATrial, SQAData]) -> None:
         sqa.experiment_id = experiment_id
 
     if reduce_state_generator_runs:
         latest_trial = trials[-1]
         trials_to_reduce_state = trials[0:-1]
 
-        # pyre-fixme[3]: Return type must be annotated.
-        def trial_to_reduced_state_sqa_encoder(t: BaseTrial):
+        def trial_to_reduced_state_sqa_encoder(t: BaseTrial) -> SQATrial:
             return encoder.trial_to_sqa(t, generator_run_reduced_state=True)
 
         _bulk_merge_into_session(
@@ -259,16 +258,32 @@ def trial_to_reduced_state_sqa_encoder(t: BaseTrial):
             batch_size=batch_size,
         )
 
-    datas = []
-    data_encode_args = []
+    datas, data_encode_args, datas_to_keep, trial_idcs = [], [], [], []
+    data_sqa_class: Type[SQAData] = cast(
+        Type[SQAData], encoder.config.class_to_sqa_class[Data]
+    )
     for trial in trials:
+        trial_idcs.append(trial.index)
         trial_datas = experiment.data_by_trial.get(trial.index, {})
         for ts, data in trial_datas.items():
             if data.db_id is None:
-                # Only need to worry about new data, since it's not really possible
-                # or supported to modify or remove existing data.
+                # This is data we have not saved before; we should add it to the
+                # database. Previously saved data for this experiment can be removed.
                 datas.append(data)
                 data_encode_args.append({"trial_index": trial.index, "timestamp": ts})
+            else:
+                datas_to_keep.append(data.db_id)
+
+        # For trials, for which we saved new data, we can first remove previously
+        # saved data if it's no longer on the experiment.
+        with session_scope() as session:
+            session.query(data_sqa_class).filter_by(experiment_id=experiment_id).filter(
+                data_sqa_class.trial_index.isnot(None)  # pyre-ignore[16]
+            ).filter(
+                data_sqa_class.trial_index.in_(trial_idcs)  # pyre-ignore[16]
+            ).filter(
+                data_sqa_class.id.not_in(datas_to_keep)  # pyre-ignore[16]
+            ).delete()
 
     _bulk_merge_into_session(
         objs=datas,