Update ensemble.yml

.github/workflows/ensemble.yml

@@ -16,7 +16,18 @@ jobs:
     steps:
     # checkout repo
     - uses: actions/checkout@v3
+      path: './repo/
 
+    # Checkout the python tools repo
+    # -------------------------------------------      
+    - name: checkout python tools repo
+      uses: actions/checkout@v3
+      with:
+        token: ${{ secrets.GITHUB_TOKEN }}
+        repository: 'european-modelling-hubs/hub-tools'
+        ref: 'main'
+        path: './tools/'
+
     - uses: r-lib/actions/setup-r@v2
       with:
         install-r: false
@@ -35,13 +46,13 @@ jobs:
 
     - name: Generate Ensemble
       run: |
-        # code here
-        # Rscript code-folder/code.R
+        # call R script from tools
+        Rscript ./tools/R-code/generate-ensemble.R --hub_path "./repo/" --agg_fun "median" --model_id "hubEnsemble" --team_id "respicast"
 
     - name: Commit changes
       uses: EndBug/add-and-commit@v7
       with: 
-          add: 'data-folder'
+          cwd: './repo'
           message: "Update ensemble data"
           default_author: github_actions
           push: true