DownloadFluID #16
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| name: DownloadFluID | |
| on: | |
| workflow_dispatch: | |
| schedule: | |
| - cron: "30 18 * * 5" | |
| # - cron: '30 18 * * 1' | |
| jobs: | |
| fluID_job: | |
| if: github.repository_owner == 'european-modelling-hubs' | |
| runs-on: ubuntu-latest | |
| outputs: | |
| changed_files: ${{ steps.download_fluID_data.outputs.imported_snapshot }} | |
| steps: | |
| # # Check if run is needed | |
| # # ----------------------------- | |
| # - name: Get previous workflow run | |
| # id: get_previous_run | |
| # if: github.event.schedule != '30 18 * * 5' | |
| # uses: actions/github-script@v6 | |
| # with: | |
| # script: | | |
| # const response = await github.rest.actions.listWorkflowRuns({ | |
| # owner: context.repo.owner, | |
| # repo: context.repo.repo, | |
| # workflow_id: 'fluID.yml', | |
| # per_page: 1, | |
| # }); | |
| # const lastRun = response.data.workflow_runs[0]; | |
| # core.setOutput('conclusion', lastRun.conclusion || 'no_run'); | |
| # - name: Cancel workflow if last run was successful (Only if not running on friday) | |
| # if: ${{ github.event.schedule != '30 18 * * 5' && steps.get_previous_run.outputs.conclusion == 'success' }} | |
| # run: | | |
| # echo "Previous run was successful. No need to run the workflow today." | |
| # exit 0 # Stop workflow run | |
| # Checkout the python tools repo | |
| # ------------------------------------------- | |
| - name: checkout python tools repo | |
| uses: actions/checkout@v3 | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| repository: 'european-modelling-hubs/hub-tools' | |
| ref: 'main' | |
| path: './tools/' | |
| # Checkout the data repository | |
| # ------------------------------------------- | |
| - name: checkout data repo | |
| uses: actions/checkout@v3 | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| repository: 'european-modelling-hubs/RespiCast-SyndromicIndicators' | |
| ref: 'main' | |
| path: './repo/' | |
| # Run Pyton code | |
| # ------------------------- | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.10' | |
| - run: pip install pandas pycountry==23.12.11 | |
| - name: download fluID data | |
| id: download_fluID_data | |
| run: | | |
| python ./tools/code/import_truth_fluID_ILI_ARI.py --hub_path ./repo | |
| - name: Commit data repo changes | |
| uses: EndBug/add-and-commit@v7 | |
| with: | |
| cwd: './repo' | |
| message: "Update data storage" | |
| default_author: github_actions | |
| push: true | |
| call-persisting-wf: | |
| needs: fluID_job | |
| uses: european-modelling-hubs/RespiCast-SyndromicIndicators/.github/workflows/persist_changes.yml@main | |
| with: | |
| changes-list: ${{ needs.fluID_job.outputs.changed_files }} | |
| secrets: | |
| envPAT: ${{ secrets.GITHUB_TOKEN }} | |