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  • cnvkit Public

    Copy number variant detection from targeted DNA sequencing

    Python 569 168 Other 11 issues need help Updated Jan 16, 2025
  • AAV Public

    Forked from Magdoll/AAV

    Scripts for analyzing PacBio AAV sequences

    Python Updated May 29, 2023
  • doc2wdl Public

    Create WDL tasks from CLI help text

    Python MIT License Updated Apr 2, 2023
  • biopython Public

    Forked from biopython/biopython

    Eric's personal Biopython branch

    Python 9 1 Other Updated Oct 22, 2022
  • cnvkit-dnanexus Public archive

    DNAnexus app for CNVkit

    Python 3 4 MIT License Updated Mar 24, 2022
  • Python 1 3 BSD 2-Clause "Simplified" License Updated Mar 24, 2022
  • WDL plugin for pytest

    Python Apache License 2.0 Updated Jan 21, 2022
  • seaborn Public

    Forked from mwaskom/seaborn

    Statistical data visualization using matplotlib

    Python 1 1 BSD 3-Clause "New" or "Revised" License Updated Jun 23, 2021
  • biocma Public

    Consensus Multiple Alignment format, using Biopython classes.

    Python 1 4 BSD 2-Clause "Simplified" License Updated Sep 24, 2020
  • Example datasets for CNVkit (http://github.com/etal/cnvkit)

    Python 21 5 Updated Aug 18, 2018
  • Simple and efficient access to genomic data for deep learning models.

    Python BSD 3-Clause "New" or "Revised" License Updated May 3, 2018
  • Validated, scalable, community developed variant calling and RNA-seq analysis

    Python MIT License Updated Feb 14, 2018
  • Conda recipes for the bioconda channel.

    Shell Updated Nov 18, 2017
  • bodymap Public

    Draw anatomical maps.

    Python 6 3 Other Updated Oct 9, 2017
  • Source of biopython.org website, migrated from MediaWiki

    CSS Updated Aug 15, 2017
  • dx-toolkit Public

    Forked from dnanexus/dx-toolkit

    DNAnexus platform client libraries

    Python Apache License 2.0 Updated May 18, 2017
  • vcf-scripts Public

    Python 1 BSD 2-Clause "Simplified" License Updated Jul 29, 2016
  • lofsigrank Public archive

    Identify potential tumor suppressors from the relative burden of loss-of-function mutations.

    Python Updated Apr 16, 2015
  • THetA Public

    Forked from raphael-group/THetA

    Tumor Heterogeneity Analysis (THetA) is an algorithm that estimates the tumor purity and clonal/subclonal copy number aberrations directly from high-throughput DNA sequencing data.

    Python 1 1 Updated Sep 29, 2014
  • IGV Public

    Forked from igvteam/igv

    Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

    Java Updated Aug 18, 2014
  • Tools for bioinformatics

    Updated Jul 21, 2014
  • talks Public

    Forked from bow/talks
    TeX Updated Jun 3, 2014
  • Updated Apr 29, 2014
  • biofrills Public

    Biomolecular sequence analysis modules -- a supplement to Biopython

    Python 7 2 BSD 2-Clause "Simplified" License Updated Oct 21, 2013
  • fammer Public

    For protein superfamily sequence profile alignment and curation.

    Python 5 5 BSD 2-Clause "Simplified" License Updated Oct 13, 2013
  • bioseq.js Public

    Simple biomolecular sequence processing for Javascript

    JavaScript 3 1 BSD 2-Clause "Simplified" License Updated Aug 15, 2012