- San Francisco, CA
- https://orcid.org/0000-0002-8106-0720
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cnvkit Public
Copy number variant detection from targeted DNA sequencing
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AAV Public
Forked from Magdoll/AAVScripts for analyzing PacBio AAV sequences
Python UpdatedMay 29, 2023 -
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biopython Public
Forked from biopython/biopythonEric's personal Biopython branch
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pytest-wdl Public
Forked from EliLillyCo/pytest-wdlWDL plugin for pytest
Python Apache License 2.0 UpdatedJan 21, 2022 -
seaborn Public
Forked from mwaskom/seabornStatistical data visualization using matplotlib
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biocma Public
Consensus Multiple Alignment format, using Biopython classes.
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cnvkit-examples Public
Example datasets for CNVkit (http://github.com/etal/cnvkit)
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genomelake Public
Forked from kundajelab/genomelakeSimple and efficient access to genomic data for deep learning models.
Python BSD 3-Clause "New" or "Revised" License UpdatedMay 3, 2018 -
bcbio-nextgen Public
Forked from bcbio/bcbio-nextgenValidated, scalable, community developed variant calling and RNA-seq analysis
Python MIT License UpdatedFeb 14, 2018 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell UpdatedNov 18, 2017 -
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biopython.github.io Public
Forked from biopython/biopython.github.ioSource of biopython.org website, migrated from MediaWiki
CSS UpdatedAug 15, 2017 -
dx-toolkit Public
Forked from dnanexus/dx-toolkitDNAnexus platform client libraries
Python Apache License 2.0 UpdatedMay 18, 2017 -
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lofsigrank Public archive
Identify potential tumor suppressors from the relative burden of loss-of-function mutations.
Python UpdatedApr 16, 2015 -
THetA Public
Forked from raphael-group/THetATumor Heterogeneity Analysis (THetA) is an algorithm that estimates the tumor purity and clonal/subclonal copy number aberrations directly from high-throughput DNA sequencing data.
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IGV Public
Forked from igvteam/igvIntegrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
Java UpdatedAug 18, 2014 -
bioinformatics Public
Forked from pjotrp/bioinformaticsTools for bioinformatics
UpdatedJul 21, 2014 -
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biofrills Public
Biomolecular sequence analysis modules -- a supplement to Biopython
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fammer Public
For protein superfamily sequence profile alignment and curation.
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bioseq.js Public
Simple biomolecular sequence processing for Javascript