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Raise max pomegranate dependency version from <=0.14.9 to <1.0.0 #911

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merged 2 commits into from
Sep 4, 2024
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Raise max pomegranate dependency version from <=0.14.9 to <1.0.0 #911

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e189a45
Update max pomegranate dependency version from <=0.14.9 to <1.0.0
etal Sep 4, 2024
037cf1d
CI: include R in macOS installation
etal Sep 4, 2024
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1 change: 1 addition & 0 deletions .github/workflows/tests-tox.yaml
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Expand Up @@ -49,6 +49,7 @@ jobs:
- name: Install Mac OS dependencies
if: runner.os == 'macOS'
run: |
brew install r
Rscript --no-environ -e "install.packages('BiocManager', repos='https://cloud.r-project.org'); BiocManager::install('DNAcopy')"
- name: Install test runner tools
run: pip install flake8 pytest tox
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2 changes: 1 addition & 1 deletion conda-env.yml
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Expand Up @@ -17,7 +17,7 @@ dependencies:
- matplotlib >=3.5.2
- numpy >=1.24.2
- pandas >=1.5.3
- pomegranate >=0.14.8, <=0.14.9
- pomegranate >=0.14.8, <1.0.0
- pyfaidx >=0.7.1
- pysam >=0.20.0
- pytest
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2 changes: 1 addition & 1 deletion devtools/conda-recipe/meta.yaml
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Expand Up @@ -22,7 +22,7 @@ requirements:
- matplotlib >=3.5.2
- numpy >=1.24.2
- pandas >=1.5.3
- pomegranate >=0.14.8, <=0.14.9
- pomegranate >=0.14.8, <1.0.0
- pyfaidx >=0.7.1
- pysam >=0.20.0
- reportlab >=3.6.12
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2 changes: 1 addition & 1 deletion requirements/core.txt
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Expand Up @@ -2,7 +2,7 @@ biopython >= 1.80
matplotlib >= 3.5.2
numpy >= 1.24.2
pandas >= 1.5.3
pomegranate >=0.14.8, <=0.14.9
pomegranate >=0.14.8, <1.0.0
pyfaidx >= 0.7.1
pysam >= 0.20.0
reportlab >= 3.6.12
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