core: clang-format most of the things.

.clang-format

@@ -36,8 +36,6 @@ BreakBeforeBinaryOperators: None
 BreakBeforeBraces: Attach
 BreakBeforeTernaryOperators: true
 BreakConstructorInitializersBeforeComma: false
-BreakAfterJavaFieldAnnotations: false
-BreakStringLiterals: true
 ColumnLimit:     80
 CommentPragmas:  '^ IWYU pragma:'
 ConstructorInitializerAllOnOneLineOrOnePerLine: false
@@ -55,12 +53,9 @@ IncludeCategories:
     Priority:        3
   - Regex:           '.*'
     Priority:        1
-IncludeIsMainRegex: '$'
 IndentCaseLabels: false
 IndentWidth:     2
 IndentWrappedFunctionNames: false
-JavaScriptQuotes: Leave
-JavaScriptWrapImports: true
 KeepEmptyLinesAtTheStartOfBlocks: true
 MacroBlockBegin: ''
 MacroBlockEnd:   ''

src/core/ComFixed.hpp

@@ -22,8 +22,8 @@
 #include "Vector.hpp"
 #include "utils/keys.hpp"
 
-#include <boost/mpi/communicator.hpp>
 #include <boost/mpi/collectives/all_reduce.hpp>
+#include <boost/mpi/communicator.hpp>
 
 #include <unordered_map>
 #include <vector>

src/core/EspressoSystemInterface.hpp

@@ -165,8 +165,7 @@ class EspressoSystemInterface : public SystemInterface {
       : m_gpu_npart(0), m_gpu(false), m_r_gpu_begin(0), m_r_gpu_end(0),
         m_dip_gpu_begin(0), m_v_gpu_begin(0), m_v_gpu_end(0), m_q_gpu_begin(0),
         m_q_gpu_end(0), m_quatu_gpu_begin(0), m_quatu_gpu_end(0),
-        m_needsParticleStructGpu(false), m_splitParticleStructGpu(false)
-        {};
+        m_needsParticleStructGpu(false), m_splitParticleStructGpu(false){};
   virtual ~EspressoSystemInterface() {}
 
   void gatherParticles();

src/core/Geometry.cpp

@@ -1,3 +1,2 @@
-#include "config.hpp"
 #include "Geometry.hpp"
-
+#include "config.hpp"

src/core/Geometry.hpp

@@ -1,16 +1,16 @@
 #include "EspressoSystemInterface.hpp"
 
 class Geometry {
-  public:
-    void set_box_l(Vector3d x) {m_box_l =x;}
-    void set_my_left(Vector3d x) {m_my_left=x;}
-    void set_my_right(Vector3d x) { m_my_right=x;}
-    Vector3d get_box_l() {return m_box_l;}
-    Vector3d get_my_left() { return m_my_left; }
-    Vector3d get_my_right() { return m_my_right; }
-  private:
-    Vector3d m_box_l;
-    Vector3d m_my_left;
-    Vector3d m_my_right;
-};
+public:
+  void set_box_l(Vector3d x) { m_box_l = x; }
+  void set_my_left(Vector3d x) { m_my_left = x; }
+  void set_my_right(Vector3d x) { m_my_right = x; }
+  Vector3d get_box_l() { return m_box_l; }
+  Vector3d get_my_left() { return m_my_left; }
+  Vector3d get_my_right() { return m_my_right; }
 
+private:
+  Vector3d m_box_l;
+  Vector3d m_my_left;
+  Vector3d m_my_right;
+};

src/core/PartCfg.hpp

@@ -30,8 +30,7 @@ class GetLocalParts {
 public:
   Range operator()() const {
     if (local_particles == nullptr) {
-      auto begin =
-        skip_it(nullptr, nullptr, SkipIfNullOrGhost());
+      auto begin = skip_it(nullptr, nullptr, SkipIfNullOrGhost());
       return Utils::make_range(make_indirect_iterator(begin),
                                make_indirect_iterator(begin));
     }

src/core/ParticleIterator.hpp

@@ -20,9 +20,9 @@ struct ParticleIterator : public boost::iterator_facade<
 public:
   friend typename std::iterator_traits<ParticleIterator>::difference_type
   distance(ParticleIterator const &begin, ParticleIterator const &end) {
-    if(begin == end)
+    if (begin == end)
       return 0;
-    
+
     /* Remaining parts in this cell */
     auto dist = ((*begin.m_cell)->n - begin.m_part_id);
     /* Now add the size of all cells between the next