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update new v0.0.4
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davidsantiagoquevedo authored Sep 21, 2024
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# vaccineff 0.0.4

## New Features

`{vaccineff 0.0.4}` simplifies data handling by using
[`linelist`](https://github.com/epiverse-trace/linelist) objects. Tags are
assigned to the outcome, censoring, and vaccine dates using the function
`make_vaccineff_data`, reducing redundancy in function input parameters.

The new pipeline includes the following three functions and complementary
methods: `summary` and `plot`.

* **`make_vaccineff_data`**: This function returns an S3 object of the class
`vaccineff_data` with the study's relevant information. It also allows
the creation of a matched cohort to control for confounding variables by
setting `match = TRUE` and passing the appropriate `exact` and `nearest`
arguments. The method `summary()` can be used to check cohort
characteristics, matching balance, and the sizes of matched, excluded,
and removed populations.

* **`plot_coverage`**: This function returns a plot of the vaccine coverage
or cumulative coverage. If the population is matched, the plot includes
the resulting count of doses after matching.

* **`effectiveness`**: This function provides methods for estimating VE using
the $HR$. A summary of the estimation is available via `summary()`, and
a graphical representation of the methodology is generated by `plot()`.

## Breaking changes

The following functions are no longer accessible to users, but they are called
within `make_vaccineff_data()`:

* `make_immunization()`
* `match_cohort()`

The `plot()` method returns `log-log` and `survival` type plots when receiving
an object of type `effectiveness`. This deprecates the functions `plot_survival()`
and `plot_loglog()`.



# vaccineff 0.0.3
## New Features

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