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[actions] update 80 packages
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amanda-minter authored Sep 3, 2024
1 parent 4b92374 commit 4dab1a1
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Showing 2 changed files with 309 additions and 221 deletions.
78 changes: 59 additions & 19 deletions renv/activate.R
Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,9 @@ local({
attr(version, "sha") <- NULL

# the project directory
project <- getwd()
project <- Sys.getenv("RENV_PROJECT")
if (!nzchar(project))
project <- getwd()

# use start-up diagnostics if enabled
diagnostics <- Sys.getenv("RENV_STARTUP_DIAGNOSTICS", unset = "FALSE")
Expand All @@ -31,6 +33,14 @@ local({
if (!is.null(override))
return(override)

# if we're being run in a context where R_LIBS is already set,
# don't load -- presumably we're being run as a sub-process and
# the parent process has already set up library paths for us
rcmd <- Sys.getenv("R_CMD", unset = NA)
rlibs <- Sys.getenv("R_LIBS", unset = NA)
if (!is.na(rlibs) && !is.na(rcmd))
return(FALSE)

# next, check environment variables
# TODO: prefer using the configuration one in the future
envvars <- c(
Expand All @@ -50,9 +60,22 @@ local({

})

if (!enabled)
# bail if we're not enabled
if (!enabled) {

# if we're not enabled, we might still need to manually load
# the user profile here
profile <- Sys.getenv("R_PROFILE_USER", unset = "~/.Rprofile")
if (file.exists(profile)) {
cfg <- Sys.getenv("RENV_CONFIG_USER_PROFILE", unset = "TRUE")
if (tolower(cfg) %in% c("true", "t", "1"))
sys.source(profile, envir = globalenv())
}

return(FALSE)

}

# avoid recursion
if (identical(getOption("renv.autoloader.running"), TRUE)) {
warning("ignoring recursive attempt to run renv autoloader")
Expand Down Expand Up @@ -108,6 +131,21 @@ local({

}

heredoc <- function(text, leave = 0) {

# remove leading, trailing whitespace
trimmed <- gsub("^\\s*\\n|\\n\\s*$", "", text)

# split into lines
lines <- strsplit(trimmed, "\n", fixed = TRUE)[[1L]]

# compute common indent
indent <- regexpr("[^[:space:]]", lines)
common <- min(setdiff(indent, -1L)) - leave
paste(substring(lines, common), collapse = "\n")

}

startswith <- function(string, prefix) {
substring(string, 1, nchar(prefix)) == prefix
}
Expand Down Expand Up @@ -610,6 +648,9 @@ local({

# if the user has requested an automatic prefix, generate it
auto <- Sys.getenv("RENV_PATHS_PREFIX_AUTO", unset = NA)
if (is.na(auto) && getRversion() >= "4.4.0")
auto <- "TRUE"

if (auto %in% c("TRUE", "True", "true", "1"))
return(renv_bootstrap_platform_prefix_auto())

Expand Down Expand Up @@ -801,24 +842,23 @@ local({

# the loaded version of renv doesn't match the requested version;
# give the user instructions on how to proceed
remote <- if (!is.null(description[["RemoteSha"]])) {
dev <- identical(description[["RemoteType"]], "github")
remote <- if (dev)
paste("rstudio/renv", description[["RemoteSha"]], sep = "@")
} else {
else
paste("renv", description[["Version"]], sep = "@")
}

# display both loaded version + sha if available
friendly <- renv_bootstrap_version_friendly(
version = description[["Version"]],
sha = description[["RemoteSha"]]
sha = if (dev) description[["RemoteSha"]]
)

fmt <- paste(
"renv %1$s was loaded from project library, but this project is configured to use renv %2$s.",
"- Use `renv::record(\"%3$s\")` to record renv %1$s in the lockfile.",
"- Use `renv::restore(packages = \"renv\")` to install renv %2$s into the project library.",
sep = "\n"
)
fmt <- heredoc("
renv %1$s was loaded from project library, but this project is configured to use renv %2$s.
- Use `renv::record(\"%3$s\")` to record renv %1$s in the lockfile.
- Use `renv::restore(packages = \"renv\")` to install renv %2$s into the project library.
")
catf(fmt, friendly, renv_bootstrap_version_friendly(version), remote)

FALSE
Expand Down Expand Up @@ -1041,7 +1081,7 @@ local({
# if jsonlite is loaded, use that instead
if ("jsonlite" %in% loadedNamespaces()) {

json <- catch(renv_json_read_jsonlite(file, text))
json <- tryCatch(renv_json_read_jsonlite(file, text), error = identity)
if (!inherits(json, "error"))
return(json)

Expand All @@ -1050,7 +1090,7 @@ local({
}

# otherwise, fall back to the default JSON reader
json <- catch(renv_json_read_default(file, text))
json <- tryCatch(renv_json_read_default(file, text), error = identity)
if (!inherits(json, "error"))
return(json)

Expand All @@ -1063,14 +1103,14 @@ local({
}

renv_json_read_jsonlite <- function(file = NULL, text = NULL) {
text <- paste(text %||% read(file), collapse = "\n")
text <- paste(text %||% readLines(file, warn = FALSE), collapse = "\n")
jsonlite::fromJSON(txt = text, simplifyVector = FALSE)
}

renv_json_read_default <- function(file = NULL, text = NULL) {

# find strings in the JSON
text <- paste(text %||% read(file), collapse = "\n")
text <- paste(text %||% readLines(file, warn = FALSE), collapse = "\n")
pattern <- '["](?:(?:\\\\.)|(?:[^"\\\\]))*?["]'
locs <- gregexpr(pattern, text, perl = TRUE)[[1]]

Expand Down Expand Up @@ -1118,14 +1158,14 @@ local({
map <- as.list(map)

# remap strings in object
remapped <- renv_json_remap(json, map)
remapped <- renv_json_read_remap(json, map)

# evaluate
eval(remapped, envir = baseenv())

}

renv_json_remap <- function(json, map) {
renv_json_read_remap <- function(json, map) {

# fix names
if (!is.null(names(json))) {
Expand All @@ -1152,7 +1192,7 @@ local({
# recurse
if (is.recursive(json)) {
for (i in seq_along(json)) {
json[i] <- list(renv_json_remap(json[[i]], map))
json[i] <- list(renv_json_read_remap(json[[i]], map))
}
}

Expand Down
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