add code step for assessments and replace figure #101
pr-receive.yaml
on: pull_request
Record PR number
4s
Build markdown source files if valid
2m 14s
Annotations
13 warnings
Record PR number
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/upload-artifact@v3, carpentries/actions/check-valid-pr@main. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
Build markdown source files if valid
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/[email protected], actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
Build markdown source files if valid:
episodes/severity-static.Rmd#L78
[image missing alt-text]: fig/cfr-spectrum-cases-covid19.jpg
|
Build markdown source files if valid:
episodes/severity-static.Rmd#L515
[image missing alt-text]: fig/cfr-pone.0006852.g003-fig_abc.png
|
Build markdown source files if valid:
episodes/severity-static.Rmd#L519
[image missing alt-text]: fig/cfr-pone.0006852.g003-fig_d.png
|
Build markdown source files if valid:
episodes/severity-static.Rmd#L575
[image missing alt-text]: fig/cfr-pone.0006852.g001.png
|
Build markdown source files if valid:
episodes/severity-static.Rmd#L815
[image missing alt-text]: fig/cfr-s41467-020-19238-2-fig_a.png
|
Build markdown source files if valid:
episodes/superspreading-estimate.Rmd#L46
[image missing alt-text]: fig/see-intro-superspreading.png
|
Build markdown source files if valid:
episodes/superspreading-estimate.Rmd#L505
[missing file]: [Evidence for variation in individual reproductive number . (Left, c) Proportion of transmission expected from the most infectious 20% of cases, for 10 outbreak or surveillance data sets (triangles). Dashed lines show proportions expected under the 20/80 rule (top) and homogeneity (bottom). (Right, d), Reported superspreading events (SSEs; diamonds) relative to estimated reproductive number R (squares) for twelve directly transmitted infections. Crosses show the 99th-percentile proposed as threshold for SSEs. (More figure details in Lloyd-Smith et al., 2005 )](fig/SEE-individual-reproductive-number-fig-c-d.png) [image missing alt-text]: fig/SEE-individual-reproductive-number-fig-c-d.png
|
Build markdown source files if valid:
episodes/superspreading-estimate.Rmd#L625
[image missing alt-text]: fig/contact-tracing-strategies.png
|
Build markdown source files if valid:
episodes/superspreading-estimate.Rmd#L749
[image missing alt-text]: fig/SEE-individual-reproductive-number-fig-d.png
|
Build markdown source files if valid:
episodes/superspreading-simulate.Rmd#L205
[image missing alt-text]: https://raw.githubusercontent.com/epiverse-trace/epichains/main/vignettes/img/transmission_chain_example.png
|
Deprecation notice: v1, v2, and v3 of the artifact actions
The following artifacts were uploaded using a version of actions/upload-artifact that is scheduled for deprecation: "built", "diff", "pr".
Please update your workflow to use v4 of the artifact actions.
Learn more: https://github.blog/changelog/2024-04-16-deprecation-notice-v3-of-the-artifact-actions/
|
Artifacts
Produced during runtime
Name | Size | |
---|---|---|
built
Expired
|
22.6 MB |
|
diff
Expired
|
1.78 KB |
|
pr
Expired
|
3 Bytes |
|