Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/upload-artifact@v3, carpentries/actions/check-valid-pr@main. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/[email protected], actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

[image missing alt-text]: fig/cfr-spectrum-cases-covid19.jpg

[image missing alt-text]: fig/cfr-pone.0006852.g003-fig_abc.png

[image missing alt-text]: fig/cfr-pone.0006852.g003-fig_d.png

[image missing alt-text]: fig/cfr-pone.0006852.g001.png

[image missing alt-text]: fig/cfr-s41467-020-19238-2-fig_a.png

[image missing alt-text]: fig/see-intro-superspreading.png

[missing file]: [Evidence for variation in individual reproductive number . (Left, c) Proportion of transmission expected from the most infectious 20% of cases, for 10 outbreak or surveillance data sets (triangles). Dashed lines show proportions expected under the 20/80 rule (top) and homogeneity (bottom). (Right, d), Reported superspreading events (SSEs; diamonds) relative to estimated reproductive number R (squares) for twelve directly transmitted infections. Crosses show the 99th-percentile proposed as threshold for SSEs. (More figure details in Lloyd-Smith et al., 2005 )](fig/SEE-individual-reproductive-number-fig-c-d.png) [image missing alt-text]: fig/SEE-individual-reproductive-number-fig-c-d.png

[image missing alt-text]: fig/contact-tracing-strategies.png

[image missing alt-text]: fig/SEE-individual-reproductive-number-fig-d.png

[image missing alt-text]: https://raw.githubusercontent.com/epiverse-trace/epichains/main/vignettes/img/transmission_chain_example.png