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add add early task packages + links to setup
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avallecam authored Jun 17, 2024
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Expand Up @@ -104,7 +104,24 @@ Open RStudio and **copy and paste** the following code chunk into the [console w

```r
if(!require("pak")) install.packages("pak")
# for episodes on read, clean, validate and visualize linelist
new_packages <- c(
"epiverse-trace/cleanepi",
"rio",
"here",
"DBI",
"RSQLite",
"dbplyr",
"linelist",
"epiverse-trace/simulist",
"incidence2",
"epiverse-trace/tracetheme",
"tidyverse"
)

pak::pkg_install(new_packages)

# for episodes on access delays and quantify transmission
new_packages <- c(
"EpiNow2",
"epiverse-trace/epiparameter",
Expand Down Expand Up @@ -224,6 +241,7 @@ The data files for the tutorial can be downloaded manually here:

- <https://epiverse-trace.github.io/tutorials-early/data/ebola_cases.csv>
- <https://epiverse-trace.github.io/tutorials-early/data/Marburg.zip>
- <https://epiverse-trace.github.io/tutorials-early/data/simulated_ebola_2.csv>

## Your Questions

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