differences for PR #35

md5sum.txt

@@ -8,6 +8,6 @@
 "episodes/delays-functions.Rmd" "1b8c594905ee34befa02f1912256b37f" "site/built/delays-functions.md" "2024-03-28"
 "instructors/instructor-notes.md" "ca3834a1b0f9e70c4702aa7a367a6bb5" "site/built/instructor-notes.md" "2024-03-28"
 "learners/reference.md" "e030f09656b2233a643e7aa2727e4fab" "site/built/reference.md" "2024-03-28"
-"learners/setup.md" "8ac1bf69c622264b6cfca977ce59bfb3" "site/built/setup.md" "2024-03-28"
+"learners/setup.md" "3720bb4d00b8f9bf1af6b0b582ff36c3" "site/built/setup.md" "2024-03-30"
 "profiles/learner-profiles.md" "31b503c4b5bd1f0960ada730eca4a25e" "site/built/learner-profiles.md" "2024-03-28"
 "renv/profiles/lesson-requirements/renv.lock" "66cc4d60718393932c53d9e114e5af9f" "site/built/renv.lock" "2024-03-28"

setup.md

@@ -4,17 +4,17 @@ title: Setup
 
 ## Motivation
 
-**Outbreaks** appear with different diseases and in different contexts, but what all of them have in common are the key public health **questions** ([Cori et al. 2017](https://royalsocietypublishing.org/doi/10.1098/rstb.2016.0371#d1e605)). Common questions also require common data analysis **tasks**.
+**Outbreaks** appear with different diseases and in different contexts, but what all of them have in common is the key public health **questions** ([Cori et al. 2017](https://royalsocietypublishing.org/doi/10.1098/rstb.2016.0371#d1e605)). We can relate these key public health questions to outbreak data analysis **tasks**.
 
-Epiverse-TRACE's aim is to provide an software ecosystem for [**outbreak analytics**](reference.md#outbreakanalytics) with integrated, generalisable and scalable community-driven software. We support the development of R packages, make the existing ones interoperable for the user experience, and stimulate a community of practice.
+Epiverse-TRACE aims to provide a software ecosystem for [**outbreak analytics**](reference.md#outbreakanalytics) with integrated, generalisable and scalable community-driven software. We support the development of R packages, make the existing ones interoperable for the user experience, and stimulate a community of practice.
 
 ### Epiverse-TRACE tutorials
 
-The tutorials are built around the workflow of outbreak analysis split into three stages: **Early tasks**, **Middle tasks** and **Late tasks**.
+The tutorials are built around an outbreak analysis pipeline split into three stages: **Early tasks**, **Middle tasks** and **Late tasks**.
 
 ![An overview of the tutorial topics](https://epiverse-trace.github.io/task_pipeline-minimal.svg)
 
-Each task has its own tutorial website. Task topics consist of one or more episodes.
+Each task has its tutorial website. Each tutorial website consists of a set of episodes.
 
 | [Early task tutorials ➠](https://epiverse-trace.github.io/tutorials-early/) | [Middle task tutorials ➠](https://epiverse-trace.github.io/tutorials-middle) | [Late task tutorials ➠](https://epiverse-trace.github.io/tutorials-late/) |
 |---|---|---|
@@ -108,6 +108,7 @@ if(!require("pak")) install.packages("pak")
 new_packages <- c(
   "EpiNow2",
   "epiverse-trace/epiparameter",
+  "incidence2",
   "tidyverse"
 )
 
@@ -123,6 +124,7 @@ When the installation has finished, you can try to load the packages by pasting
 ```r
 library(EpiNow2)
 library(epiparameter)
+library(incidence2)
 library(tidyverse)
 ```