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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,10 +1,16 @@ | ||
Package: readepi | ||
<<<<<<< HEAD | ||
Title: Read Data From Health Information Systems | ||
Version: 1.0.0 | ||
======= | ||
Title: Import Data From Files and Health Information Systems Into R | ||
Version: 0.0.1 | ||
>>>>>>> main | ||
Authors@R: c( | ||
person("Karim", "Mané", , "[email protected]", role = c("aut", "cre"), | ||
comment = c(ORCID = "0000-0002-9892-2999")), | ||
person("Bubacarr", "Bah", , "[email protected]", role = "ctb", | ||
<<<<<<< HEAD | ||
comment = c(ORCID = "0000-0003-3318-6668")), | ||
person("Bankolé", "Ahadzie", , "[email protected]", role = "ctb"), | ||
person("Nuredin", "Mohammed", , "[email protected]", role = "ctb"), | ||
|
@@ -19,11 +25,32 @@ Authors@R: c( | |
Description: Data import from several sources including files and health | ||
information systems (HIS). The current version of the package covers | ||
HIS such as MS SQL, MySQL, PostGRESQL servers, REDCap, DHIS2 and | ||
======= | ||
comment = c(ORCID = "0000-0003-3318-6668")), | ||
person("Bankolé", "Ahadzie", , "[email protected]", role = "ctb"), | ||
person("Nuredin", "Mohammed", , | ||
"[email protected]", role = "ctb"), | ||
person("Hugo", "Gruson", , "[email protected]", role = "rev", | ||
comment = c(ORCID = "0000-0002-4094-1476")), | ||
person("Pratik", "Gupte", , "[email protected]", role = "rev", | ||
comment = c(ORCID = "0000-0001-5294-7819")), | ||
person("Andree", "Valle-Campos", , | ||
"[email protected]", role = "rev", | ||
comment = c(ORCID = "0000-0002-7779-481X")) | ||
) | ||
Description: Data import from several sources. These include files and | ||
health information systems (HIS). The current version of the package | ||
covers HIS such as REDCap, SQL, MySQL, PostGRESQL servers, DHIS2 and | ||
>>>>>>> main | ||
Fingertips. | ||
License: MIT + file LICENSE | ||
URL: https://github.com/epiverse-trace/readepi | ||
BugReports: https://github.com/epiverse-trace/readepi/issues | ||
<<<<<<< HEAD | ||
Imports: | ||
======= | ||
Imports: | ||
>>>>>>> main | ||
checkmate, | ||
data.table, | ||
DBI, | ||
|
@@ -34,6 +61,7 @@ Imports: | |
magrittr, | ||
odbc, | ||
pool, | ||
<<<<<<< HEAD | ||
REDCapR, | ||
RMySQL | ||
Suggests: | ||
|
@@ -42,11 +70,30 @@ Suggests: | |
knitr, | ||
rmarkdown, | ||
testthat (>= 3.0.0) | ||
======= | ||
purrr, | ||
R.utils, | ||
readxl, | ||
REDCapR, | ||
rio, | ||
RMySQL, | ||
stringr | ||
Suggests: | ||
covr, | ||
devtools, | ||
knitr, | ||
rmarkdown, | ||
testthat (>= 3.0.0), | ||
usethis | ||
>>>>>>> main | ||
VignetteBuilder: | ||
knitr | ||
Remotes: | ||
rOpenSci/fingertipsR | ||
<<<<<<< HEAD | ||
Config/Needs/website: epiverse-trace/epiversetheme | ||
======= | ||
>>>>>>> main | ||
Config/testthat/edition: 3 | ||
Encoding: UTF-8 | ||
Roxygen: list(markdown = TRUE) | ||
|
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---|---|---|
@@ -1,9 +1,58 @@ | ||
# Generated by roxygen2: do not edit by hand | ||
|
||
<<<<<<< HEAD | ||
export(get_dhis2_attributes) | ||
export(readepi) | ||
export(show_example_file) | ||
export(show_tables) | ||
======= | ||
export(check_dhis2_attributes) | ||
export(connect_to_server) | ||
export(detect_separator) | ||
export(dhis2_subset_fields) | ||
export(dhis2_subset_records) | ||
export(fetch_data_from_query) | ||
export(fingertips_subset_columns) | ||
export(fingertips_subset_rows) | ||
export(get_base_name) | ||
export(get_data_elements) | ||
export(get_data_sets) | ||
export(get_extension) | ||
export(get_fingertips_metadata) | ||
export(get_ind_id_from_domain_id) | ||
export(get_ind_id_from_domain_name) | ||
export(get_ind_id_from_ind_name) | ||
export(get_ind_id_from_profile) | ||
export(get_organisation_units) | ||
export(get_profile_name) | ||
export(get_read_file_args) | ||
export(get_read_fingertips_args) | ||
export(get_relevant_data_elt_group) | ||
export(get_relevant_dataset) | ||
export(get_relevant_organisation_unit) | ||
export(identify_table_name) | ||
export(import_redcap_data) | ||
export(read_credentials) | ||
export(read_from_dhis2) | ||
export(read_from_file) | ||
export(read_from_fingertips) | ||
export(read_from_redcap) | ||
export(read_multiple_files) | ||
export(readepi) | ||
export(redcap_get_results) | ||
export(redcap_read) | ||
export(redcap_read_fields) | ||
export(redcap_read_records) | ||
export(redcap_read_rows_columns) | ||
export(show_example_file) | ||
export(show_tables) | ||
export(sql_select_data) | ||
export(sql_select_entire_dataset) | ||
export(sql_select_fields_only) | ||
export(sql_select_records_and_fields) | ||
export(sql_select_records_only) | ||
export(sql_server_read_data) | ||
>>>>>>> main | ||
export(visualise_table) | ||
importFrom(magrittr,"%>%") | ||
importFrom(utils,read.table) |
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