-
Notifications
You must be signed in to change notification settings - Fork 5
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Remove \dontrun{} when not strictly required (#61)
* add the examples to the functions documentations * build documentation for show_tables() and visualise_table() * Update CITATION.cff * update function's examples * fix linters * add new lines * remove unnecessary nolint * use explicit URL * update show_example_file documentation * align argument in function documentation * Automatic readme update * add examples and remove dontrun{} when not needed in DHIS2 related functions * add examples and remove dontrun{} when not needed in Fingertips related functions * add examples and remove dontrun{} when not needed in REDCap related functions * add examples and remove dontrun{} when not needed in server related functions * add examples and remove dontrun{} when not needed in readepi related functions * run devtools::document() * remove README.html * rearrange arguments in read_from_readcap example * complete test example for dhis2_get_attributes_from_user * Update _pkgdown.yml to account for read_from_fingertips * update on dhis2_get_attributes_from_user() * Update CITATION.cff * remove examples in internal functions documentation - for functions without dontrun{} * Update R/read_from_fingertips.R remove @nord in the function documentation Co-authored-by: Hugo Gruson <[email protected]> --------- Co-authored-by: Karim-Mane <[email protected]> Co-authored-by: GitHub Action <[email protected]> Co-authored-by: Karim MANE <[email protected]> Co-authored-by: Hugo Gruson <[email protected]>
- Loading branch information
1 parent
0eae01f
commit 3d715e2
Showing
39 changed files
with
357 additions
and
653 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
|
@@ -55,34 +55,34 @@ references: | |
abstract: 'checkmate: Fast and Versatile Argument Checks' | ||
notes: Imports | ||
url: https://mllg.github.io/checkmate/ | ||
repository: https://packagemanager.posit.co/cran/latest/ | ||
repository: https://CRAN.R-project.org/package=checkmate | ||
authors: | ||
- family-names: Lang | ||
given-names: Michel | ||
email: [email protected] | ||
orcid: https://orcid.org/0000-0001-9754-0393 | ||
year: '2023' | ||
year: '2024' | ||
- type: software | ||
title: DBI | ||
abstract: 'DBI: R Database Interface' | ||
notes: Imports | ||
url: https://dbi.r-dbi.org | ||
repository: https://packagemanager.posit.co/cran/latest/ | ||
repository: https://CRAN.R-project.org/package=DBI | ||
authors: | ||
- name: R Special Interest Group on Databases (R-SIG-DB) | ||
- family-names: Wickham | ||
given-names: Hadley | ||
- family-names: Müller | ||
given-names: Kirill | ||
email: [email protected] | ||
email: [email protected] | ||
orcid: https://orcid.org/0000-0002-1416-3412 | ||
year: '2023' | ||
year: '2024' | ||
- type: software | ||
title: dplyr | ||
abstract: 'dplyr: A Grammar of Data Manipulation' | ||
notes: Imports | ||
url: https://dplyr.tidyverse.org | ||
repository: https://packagemanager.posit.co/cran/latest/ | ||
repository: https://CRAN.R-project.org/package=dplyr | ||
authors: | ||
- family-names: Wickham | ||
given-names: Hadley | ||
|
@@ -100,7 +100,7 @@ references: | |
given-names: Davis | ||
email: [email protected] | ||
orcid: https://orcid.org/0000-0003-4777-038X | ||
year: '2023' | ||
year: '2024' | ||
- type: software | ||
title: fingertipsR | ||
abstract: 'fingertipsR: Fingertips Data for Public Health' | ||
|
@@ -115,69 +115,69 @@ references: | |
email: [email protected] | ||
- family-names: Flowers | ||
given-names: Julian | ||
year: '2023' | ||
year: '2024' | ||
version: '>= 1.0.10.9001' | ||
- type: software | ||
title: glue | ||
abstract: 'glue: Interpreted String Literals' | ||
notes: Imports | ||
url: https://glue.tidyverse.org/ | ||
repository: https://packagemanager.posit.co/cran/latest/ | ||
repository: https://CRAN.R-project.org/package=glue | ||
authors: | ||
- family-names: Hester | ||
given-names: Jim | ||
orcid: https://orcid.org/0000-0002-2739-7082 | ||
- family-names: Bryan | ||
given-names: Jennifer | ||
email: jenny@rstudio.com | ||
email: jenny@posit.co | ||
orcid: https://orcid.org/0000-0002-6983-2759 | ||
year: '2023' | ||
year: '2024' | ||
- type: software | ||
title: httr | ||
abstract: 'httr: Tools for Working with URLs and HTTP' | ||
notes: Imports | ||
url: https://httr.r-lib.org/ | ||
repository: https://packagemanager.posit.co/cran/latest/ | ||
repository: https://CRAN.R-project.org/package=httr | ||
authors: | ||
- family-names: Wickham | ||
given-names: Hadley | ||
email: [email protected] | ||
year: '2023' | ||
year: '2024' | ||
- type: software | ||
title: magrittr | ||
abstract: 'magrittr: A Forward-Pipe Operator for R' | ||
notes: Imports | ||
url: https://magrittr.tidyverse.org | ||
repository: https://packagemanager.posit.co/cran/latest/ | ||
repository: https://CRAN.R-project.org/package=magrittr | ||
authors: | ||
- family-names: Bache | ||
given-names: Stefan Milton | ||
email: [email protected] | ||
- family-names: Wickham | ||
given-names: Hadley | ||
email: [email protected] | ||
year: '2023' | ||
year: '2024' | ||
- type: software | ||
title: odbc | ||
abstract: 'odbc: Connect to ODBC Compatible Databases (using the DBI Interface)' | ||
notes: Imports | ||
url: https://r-dbi.github.io/odbc/ | ||
repository: https://packagemanager.posit.co/cran/latest/ | ||
url: https://odbc.r-dbi.org | ||
repository: https://CRAN.R-project.org/package=odbc | ||
authors: | ||
- family-names: Hester | ||
given-names: Jim | ||
- family-names: Wickham | ||
given-names: Hadley | ||
email: hadley@rstudio.com | ||
email: hadley@posit.co | ||
- family-names: Gjoneski | ||
given-names: Oliver | ||
year: '2023' | ||
year: '2024' | ||
- type: software | ||
title: pool | ||
abstract: 'pool: Object Pooling' | ||
notes: Imports | ||
url: http://rstudio.github.io/pool/ | ||
repository: https://packagemanager.posit.co/cran/latest/ | ||
repository: https://CRAN.R-project.org/package=pool | ||
authors: | ||
- family-names: Cheng | ||
given-names: Joe | ||
|
@@ -187,25 +187,25 @@ references: | |
- family-names: Wickham | ||
given-names: Hadley | ||
email: [email protected] | ||
year: '2023' | ||
year: '2024' | ||
- type: software | ||
title: REDCapR | ||
abstract: 'REDCapR: Interaction Between R and REDCap' | ||
notes: Imports | ||
url: https://ouhscbbmc.github.io/REDCapR/ | ||
repository: https://packagemanager.posit.co/cran/latest/ | ||
repository: https://CRAN.R-project.org/package=REDCapR | ||
authors: | ||
- family-names: Beasley | ||
given-names: Will | ||
email: [email protected] | ||
orcid: https://orcid.org/0000-0002-5613-5006 | ||
year: '2023' | ||
year: '2024' | ||
- type: software | ||
title: RMySQL | ||
abstract: 'RMySQL: Database Interface and ''MySQL'' Driver for R' | ||
notes: Imports | ||
url: https://downloads.mariadb.org/connector-c/ | ||
repository: https://packagemanager.posit.co/cran/latest/ | ||
repository: https://CRAN.R-project.org/package=RMySQL | ||
authors: | ||
- family-names: Ooms | ||
given-names: Jeroen | ||
|
@@ -220,19 +220,19 @@ references: | |
email: [email protected] | ||
- family-names: Horner | ||
given-names: Jeffrey | ||
year: '2023' | ||
year: '2024' | ||
- type: software | ||
title: httptest | ||
abstract: 'httptest: A Test Environment for HTTP Requests' | ||
notes: Suggests | ||
url: https://enpiar.com/r/httptest/ | ||
repository: https://packagemanager.posit.co/cran/latest/ | ||
repository: https://CRAN.R-project.org/package=httptest | ||
authors: | ||
- family-names: Richardson | ||
given-names: Neal | ||
email: [email protected] | ||
orcid: https://orcid.org/0009-0002-7992-3520 | ||
year: '2023' | ||
year: '2024' | ||
- type: software | ||
title: knitr | ||
abstract: 'knitr: A General-Purpose Package for Dynamic Report Generation in R' | ||
|
@@ -244,7 +244,7 @@ references: | |
given-names: Yihui | ||
email: [email protected] | ||
orcid: https://orcid.org/0000-0003-0645-5666 | ||
year: '2023' | ||
year: '2024' | ||
- type: software | ||
title: rmarkdown | ||
abstract: 'rmarkdown: Dynamic Documents for R' | ||
|
@@ -287,7 +287,7 @@ references: | |
given-names: Richard | ||
email: [email protected] | ||
orcid: https://orcid.org/0000-0003-3925-190X | ||
year: '2023' | ||
year: '2024' | ||
- type: software | ||
title: testthat | ||
abstract: 'testthat: Unit Testing for R' | ||
|
@@ -298,7 +298,7 @@ references: | |
- family-names: Wickham | ||
given-names: Hadley | ||
email: [email protected] | ||
year: '2023' | ||
year: '2024' | ||
version: '>= 3.0.0' | ||
identifiers: | ||
- type: url | ||
|
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Oops, something went wrong.