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Adapt content to outbreak context and R packages #13

Merged
merged 153 commits into from
Nov 27, 2023
Merged

Adapt content to outbreak context and R packages #13

merged 153 commits into from
Nov 27, 2023

Commits on Nov 6, 2023

  1. update config

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  2. add introduction and section on file types

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  3. add git config from rstudio console

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  4. add create repo in next episode

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  5. replace motivation with video

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  6. add link to discussion tab

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  7. add r rstudio packages installation

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  8. add figures for episode 01-basics and 02-setup

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  9. replace planet with outbreak scenario

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  10. add rstudio console reference for setup

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  11. replace to cases and interventions with usethis 

    instead of plantes, moons, and git init. keep the terminal as alternative.
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  12. block the branch main chunk

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  13. add intro about git jargon

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  14. move git init to rstudio console section

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  15. add subtitle to create repo

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  16. add git init verb figure

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  17. paste figures to episode

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  18. add episode 03

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  19. add figures of terminal pane and motivation example

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  20. add checklist and fix figure

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  21. add scenario figure in index

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  22. fix figure and chunk outputs

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  23. add figure to scenario in index

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  24. add section using the terminal

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  25. replace planets with cases

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  26. add subtitles to episode 04

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  27. add notes + replace create file with usethis

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  28. add chapter 04-changes

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Commits on Nov 7, 2023

  1. add episode 14 with supplementary rstudio

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  2. replace venus with data, txt with md, and notes

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  3. add summary figure add commit status log diff

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  4. add in-terminal specification + subtitle rename

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  5. update length

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  6. update batch name

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Commits on Nov 9, 2023

  1. add console an terminal figures

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  2. reduce length of title

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  3. add time lenght of video

    @avallecam
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  4. remove gert spoilers

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  5. add prerequisite callout of R and Bash code

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  6. add create token subtitle

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  7. fix figure + add terminal earlier

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  8. add emphasis on terminal and console exchange

    @avallecam
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  9. add git token figure

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  10. fix subtitle

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  11. connect with next episode 

    book contains same material
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  12. connect usefulness of buttons in next episodes

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Commits on Nov 10, 2023

  1. add git init callout

    @avallecam
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  2. remove mention to different editors

    @avallecam
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  3. add subtitles

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  4. add instructor note on git_sitrep

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  5. homogenize verifications with usethis sitrep

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  6. add token definition

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  7. add that pat is the credential

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  8. replace data with analyses folder

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  9. fix typos

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  10. add reference to previous episode

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  11. add episode 05-history

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  12. add format to keypoints

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  13. add save file before terminal action + clean Rmd

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  14. change name of analysis files

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  15. replace planets story with cases

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Commits on Nov 11, 2023

  1. remove temporal reference to git init in episode14

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  2. update text about extra episode

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  3. move rstudio how-tos to testimonial at the end

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  4. add further reading testimonial of similar commands

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  5. add updated blogpost on top of episode

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  6. remove console and terminal words from prereq

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  7. show bash tutorial at the end of solution

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  8. add definitions visible on status log 

    to help on confusions
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  9. add clear guide to not change editor in rstudio

    @avallecam
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  10. add bold to terminal or command tab

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  11. fix link to previous episode

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  12. add terminal detail to callout action

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  13. fix typos in subtitles

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  14. add link to quick reference links

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  15. add hint callout and link to git reference docu

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  16. translate to outbreak and rcompendium story

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  17. add episode 06-ignore

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  18. add subtitles and bold to console or terminal

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  19. replace graphs with output folder name

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  20. show proxy for users that need it

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  21. fix reference

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  22. add fixme section

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  23. add prereq using usethis git sitrep

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  24. add episode 07

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  25. add prereq and open how to create project.

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  26. replace ssh with https protocol

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  27. add fixme tag

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  28. add episode 13 associated with episode 07

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  29. fix text after html review

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Commits on Nov 12, 2023

  1. add episodes 08-collab and 15-wrapup

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  2. replace link to read about undoing commits changes

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  3. update figures for episode 07-github

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  4. add checklist concept figure at the end

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  5. fix checklist concept figures paths

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  6. add complementary episodes

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  7. add wrap up after all episodes with git commands

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  8. fix figure paths

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  9. add wrapup from template

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  10. remove rstudio testimonial

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  11. fix figure output

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  12. add reference to rstudio episode

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  13. add supplemental rstudio on top

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  14. replace raw and derived folder names

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  15. hide verb command divisions

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  16. change planets to outbreak scenario

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  17. add and update concept map figures

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  18. add new figures for episode 08

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  19. add introduction on top

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  20. add github profile challenge

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  21. edit figure, add bold to role, add subtitle

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  22. recover subtitle

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  23. fix typos from first review

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  24. update fetch figure

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  25. translate content from space to outbreak

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  26. add episode 09 conflict

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  27. fix intro readability

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  28. add figures for episode 14 rstudio

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  29. add figures and sections

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  30. rename episode title

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    avallecam committed Nov 12, 2023
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  31. remove fixme chunk

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    avallecam committed Nov 12, 2023
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  32. relocate callout about gitignore

    @avallecam
    avallecam committed Nov 12, 2023
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  33. add feature branches keypoint

    @avallecam
    avallecam committed Nov 12, 2023
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  34. add git tab as alternative

    @avallecam
    avallecam committed Nov 12, 2023
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  35. detail change of tab

    @avallecam
    avallecam committed Nov 12, 2023
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  36. reduce size of figures

    @avallecam
    avallecam committed Nov 12, 2023
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  37. recover the supplemental name of episode

    @avallecam
    avallecam committed Nov 12, 2023
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  38. inform about the create branch episode

    @avallecam
    avallecam committed Nov 12, 2023
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  39. add intro section and checklist at the end

    @avallecam
    avallecam committed Nov 12, 2023
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  40. add reference on plain text files

    @avallecam
    avallecam committed Nov 12, 2023
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  41. add good practice box on commit length

    @avallecam
    avallecam committed Nov 12, 2023
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  42. add good practice chunk + keypoint + fix typo

    @avallecam
    avallecam committed Nov 12, 2023
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  43. add subtitle section on atomic commits

    @avallecam
    avallecam committed Nov 12, 2023
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  44. add good collaboration practices

    @avallecam
    avallecam committed Nov 12, 2023
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  45. add figures for atomic commit

    @avallecam
    avallecam committed Nov 12, 2023
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  46. add git tab figure

    @avallecam
    avallecam committed Nov 12, 2023
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  47. add checklist to complementary links

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    avallecam committed Nov 12, 2023
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Commits on Nov 22, 2023

  1. fix writing typos for clarity 

    Co-authored-by: Joshua Lambert <[email protected]>
    @avallecam @joshwlambert
    avallecam and joshwlambert authored Nov 22, 2023
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  2. fix writing typos for clarity 

    Co-authored-by: Joshua Lambert <[email protected]>
    @avallecam @joshwlambert
    avallecam and joshwlambert authored Nov 22, 2023
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  3. add edit for simpler phrasing

    @avallecam
    avallecam authored Nov 22, 2023
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  4. add scopes descriptions for token

    @avallecam
    avallecam authored Nov 22, 2023
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  5. add callout on scopes options

    @avallecam
    avallecam committed Nov 22, 2023
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  6. remove the proxy callout to visible content

    @avallecam
    avallecam committed Nov 22, 2023
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  7. add capital letter to Git as noun

    @avallecam
    avallecam authored Nov 22, 2023
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Commits on Nov 23, 2023

  1. add once per session or computer figure

    @avallecam
    avallecam committed Nov 23, 2023
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  2. Merge branch 'dev-adapt-v2' of https://github.com/epiverse-trace/git-… 

    …rstudio-basics into dev-adapt-v2
    @avallecam
    avallecam committed Nov 23, 2023
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  3. add hidden file figures

    @avallecam
    avallecam committed Nov 23, 2023
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  4. fix for clarity 

    Co-authored-by: Joshua Lambert <[email protected]>
    @avallecam @joshwlambert
    avallecam and joshwlambert authored Nov 23, 2023
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  5. fix for clarity

    @avallecam
    avallecam authored Nov 23, 2023
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  6. edit keypoint for clarity

    @avallecam
    avallecam authored Nov 23, 2023
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  7. add callout to avoid confusion of a new git space

    @avallecam
    avallecam committed Nov 23, 2023
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Commits on Nov 27, 2023

  1. relocate good practice callout to avoid redundancy

    @avallecam
    avallecam committed Nov 27, 2023
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  2. Merge branch 'main' of https://github.com/epiverse-trace/git-rstudio-… 

    …basics into dev-adapt-v2
    Andree Valle Campos committed Nov 27, 2023
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