v2.4.0

Changed

• Output filenames to include sample alias.
• Output filename formating standardised.
• In the report 'reads' now refers to number of reads not subreads.
• kit and expected_cells (visium excepted) are now required. Either as individual parameter or defined per sample via the single_cell_sample_sheet.
• Reconcile wf with template v5.3.3.

Added

• Minimum read quality filter.
• 10x 5prime:v3 support.
• Barcode statistics output file.