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#6028 – Increase monomers locator index by 1 caused by added arrow ma…
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…rker <use> tag
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@svvald
svvald committed Dec 25, 2024
1 parent 813bb9f commit 18eb949
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84 changes: 42 additions & 42 deletions ...tests/Macromolecule-editor/Ambiguous-Monomers/ambiguous-monomer-attachment-points.spec.ts
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Original file line number Diff line number Diff line change
Expand Up @@ -86,254 +86,254 @@ const ambiguousMonomers: IHELMString[] = [
testDescription:
'1. Ambiguous alternatives peptide made of peptide(R1) and peptide(R1) should result in peptide(R1)',
HELMString: 'PEPTIDE1{([Pyrro],[Am-])}$$$V2.0',
monomerLocatorIndex: 0,
monomerLocatorIndex: 1,
},
{
testDescription:
'2. Ambiguous alternatives peptide made of peptide(R2) and peptide(R2) should result in peptide(R2)',
HELMString: 'PEPTIDE1{([Glc],[Hva])}$$$V2.0',
monomerLocatorIndex: 0,
monomerLocatorIndex: 1,
},
{
testDescription:
'3. Ambiguous alternatives peptide made of peptide(R2+R3) and peptide(R2+R3) should result in peptide(R2+R3)',
HELMString: 'PEPTIDE1{([Mpa],[Mba])}$$$V2.0',
monomerLocatorIndex: 0,
monomerLocatorIndex: 1,
},
{
testDescription:
'4. Ambiguous alternatives peptide made of peptide(R1+R2) and peptide(R1+R2) should result in peptide(R1+R2)',
HELMString: 'PEPTIDE1{([D-Nle],[2Nal])}$$$V2.0',
monomerLocatorIndex: 0,
monomerLocatorIndex: 1,
},
{
testDescription:
'5. Ambiguous alternatives peptide made of peptide(R1+R2+R3) and peptide(R1+R2+R3) should result in peptide(R1+R2+R3)',
HELMString: 'PEPTIDE1{([Aad],[Asu])}$$$V2.0',
monomerLocatorIndex: 0,
monomerLocatorIndex: 1,
},
{
testDescription:
'6. Ambiguous alternatives peptide made of peptide(R1) and peptide(R1+R2+R3) should result in peptide(R1)',
HELMString: 'PEPTIDE1{([Pyrro],[Asu])}$$$V2.0',
monomerLocatorIndex: 0,
monomerLocatorIndex: 1,
},
{
testDescription:
'7. Ambiguous alternatives peptide made of peptide(R2) and peptide(R1) should result in peptide with no APs',
HELMString: 'PEPTIDE1{([Glc],[Am-])}$$$V2.0',
monomerLocatorIndex: 0,
monomerLocatorIndex: 1,
},
{
testDescription:
'8. Ambiguous alternatives peptide made of peptide(R2+R3) and peptide(R2) should result in peptide(R2)',
HELMString: 'PEPTIDE1{([Mpa],[Hva])}$$$V2.0',
monomerLocatorIndex: 0,
monomerLocatorIndex: 1,
},
{
testDescription:
'9. Ambiguous alternatives peptide made of peptide(R1+R2) and peptide(R2+R3) should result in peptide(R2)',
HELMString: 'PEPTIDE1{([D-Nle],[Mba])}$$$V2.0',
monomerLocatorIndex: 0,
monomerLocatorIndex: 1,
},
{
testDescription:
'10. Ambiguous alternatives peptide made of peptide(R1+R2+R3) and peptide(R1+R2) should result in peptide(R1+R2)',
HELMString: 'PEPTIDE1{([Aad],[2Nal])}$$$V2.0',
monomerLocatorIndex: 0,
monomerLocatorIndex: 1,
},
{
testDescription:
'11. Ambiguous alternatives peptide made of peptide(R1) and peptide(R1+R2) should result in peptide(R1)',
HELMString: 'PEPTIDE1{([Pyrro],[2Nal])}$$$V2.0',
monomerLocatorIndex: 0,
monomerLocatorIndex: 1,
},
{
testDescription:
'12. Ambiguous alternatives peptide made of peptide(R2) and peptide(R1+R2+R3) should result in peptide(R2)',
HELMString: 'PEPTIDE1{([Glc],[Asu])}$$$V2.0',
monomerLocatorIndex: 0,
monomerLocatorIndex: 1,
},
{
testDescription:
'13. Ambiguous alternatives peptide made of peptide(R2+R3) and peptide(R1) should result in peptide with no APs',
HELMString: 'PEPTIDE1{([Mpa],[Am-])}$$$V2.0',
monomerLocatorIndex: 0,
monomerLocatorIndex: 1,
},
{
testDescription:
'14. Ambiguous alternatives peptide made of peptide(R1+R2) and peptide(R2) should result in peptide(R2)',
HELMString: 'PEPTIDE1{([D-Nle],[Hva])}$$$V2.0',
monomerLocatorIndex: 0,
monomerLocatorIndex: 1,
},
{
testDescription:
'15. Ambiguous alternatives peptide made of peptide(R1+R2+R3) and peptide(R2+R3) should result in peptide(R2+R3)',
HELMString: 'PEPTIDE1{([Aad],[Mba])}$$$V2.0',
monomerLocatorIndex: 0,
monomerLocatorIndex: 1,
},
{
testDescription:
'16. Ambiguous mixed peptide made of peptide(R1) and peptide(R1) should result in peptide(R1)',
HELMString: 'PEPTIDE1{([Pyrro]+[Am-])}$$$V2.0',
monomerLocatorIndex: 0,
monomerLocatorIndex: 1,
},
{
testDescription:
'17. Ambiguous mixed peptide made of peptide(R2) and peptide(R2) should result in peptide(R2)',
HELMString: 'PEPTIDE1{([Glc]+[Hva])}$$$V2.0',
monomerLocatorIndex: 0,
monomerLocatorIndex: 1,
},
{
testDescription:
'18. Ambiguous mixed peptide made of peptide(R2+R3) and peptide(R2+R3) should result in peptide(R2+R3)',
HELMString: 'PEPTIDE1{([Mpa]+[Mba])}$$$V2.0',
monomerLocatorIndex: 0,
monomerLocatorIndex: 1,
},
{
testDescription:
'19. Ambiguous mixed peptide made of peptide(R1+R2) and peptide(R1+R2) should result in peptide(R1+R2)',
HELMString: 'PEPTIDE1{([D-Nle]+[2Nal])}$$$V2.0',
monomerLocatorIndex: 0,
monomerLocatorIndex: 1,
},
{
testDescription:
'20. Ambiguous mixed peptide made of peptide(R1+R2+R3) and peptide(R1+R2+R3) should result in peptide(R1+R2+R3)',
HELMString: 'PEPTIDE1{([Aad]+[Asu])}$$$V2.0',
monomerLocatorIndex: 0,
monomerLocatorIndex: 1,
},
{
testDescription:
'21. Ambiguous mixed peptide made of peptide(R1) and peptide(R1+R2+R3) should result in peptide(R1)',
HELMString: 'PEPTIDE1{([Pyrro]+[Asu])}$$$V2.0',
monomerLocatorIndex: 0,
monomerLocatorIndex: 1,
},
{
testDescription:
'22. Ambiguous mixed peptide made of peptide(R2) and peptide(R1) should result in peptide with no APs',
HELMString: 'PEPTIDE1{([Glc]+[Am-])}$$$V2.0',
monomerLocatorIndex: 0,
monomerLocatorIndex: 1,
},
{
testDescription:
'23. Ambiguous mixed peptide made of peptide(R2+R3) and peptide(R2) should result in peptide(R2)',
HELMString: 'PEPTIDE1{([Mpa]+[Hva])}$$$V2.0',
monomerLocatorIndex: 0,
monomerLocatorIndex: 1,
},
{
testDescription:
'24. Ambiguous mixed peptide made of peptide(R1+R2) and peptide(R2+R3) should result in peptide(R2)',
HELMString: 'PEPTIDE1{([D-Nle]+[Mba])}$$$V2.0',
monomerLocatorIndex: 0,
monomerLocatorIndex: 1,
},
{
testDescription:
'25. Ambiguous mixed peptide made of peptide(R1+R2+R3) and peptide(R1+R2) should result in peptide(R1+R2)',
HELMString: 'PEPTIDE1{([Aad]+[2Nal])}$$$V2.0',
monomerLocatorIndex: 0,
monomerLocatorIndex: 1,
},
{
testDescription:
'26. Ambiguous mixed peptide made of peptide(R1) and peptide(R1+R2) should result in peptide(R1)',
HELMString: 'PEPTIDE1{([Pyrro]+[2Nal])}$$$V2.0',
monomerLocatorIndex: 0,
monomerLocatorIndex: 1,
},
{
testDescription:
'27. Ambiguous mixed peptide made of peptide(R2) and peptide(R1+R2+R3) should result in peptide(R2)',
HELMString: 'PEPTIDE1{([Glc]+[Asu])}$$$V2.0',
monomerLocatorIndex: 0,
monomerLocatorIndex: 1,
},
{
testDescription:
'28. Ambiguous mixed peptide made of peptide(R2+R3) and peptide(R1) should result in peptide with no APs',
HELMString: 'PEPTIDE1{([Mpa]+[Am-])}$$$V2.0',
monomerLocatorIndex: 0,
monomerLocatorIndex: 1,
},
{
testDescription:
'29. Ambiguous mixed peptide made of peptide(R1+R2) and peptide(R2) should result in peptide(R2)',
HELMString: 'PEPTIDE1{([D-Nle]+[Hva])}$$$V2.0',
monomerLocatorIndex: 0,
monomerLocatorIndex: 1,
},
{
testDescription:
'30. Ambiguous mixed peptide made of peptide(R1+R2+R3) and peptide(R2+R3) should result in peptide(R2+R3)',
HELMString: 'PEPTIDE1{([Aad]+[Mba])}$$$V2.0',
monomerLocatorIndex: 0,
monomerLocatorIndex: 1,
},
{
testDescription:
'31. Ambiguous alternatives base made of base(R1) and base(R1) should result in base(R1)',
HELMString: 'RNA1{R([2imen2],[5meC])P}$$$$V2.0',
monomerLocatorIndex: 1,
monomerLocatorIndex: 2,
pageReloadNeeded: true,
},
{
testDescription:
'32. Ambiguous alternatives base made of base(R1+R2) and base(R1+R2) should result in base(R1+R2)',
HELMString: 'RNA1{R([oC64m5],[nC65U])P}$$$$V2.0',
monomerLocatorIndex: 1,
monomerLocatorIndex: 2,
},
{
testDescription:
'33. Ambiguous alternatives base made of base(R1+R2+R3) and base(R1+R2+R3) should result in base(R1+R2+R3)',
HELMString: 'RNA1{R([nC6n5C],[nC6n8A])P}$$$$V2.0',
monomerLocatorIndex: 1,
monomerLocatorIndex: 2,
},
{
testDescription:
'34. Ambiguous alternatives base made of base(R1) and base(R1+R2+R3) should result in base(R1)',
HELMString: 'RNA1{R([2imen2],[nC6n8A])P}$$$$V2.0',
monomerLocatorIndex: 1,
monomerLocatorIndex: 2,
},
{
testDescription:
'35. Ambiguous alternatives base made of base(R1+R2) and base(R1) should result in base(R1)',
HELMString: 'RNA1{R([oC64m5],[5meC])P}$$$$V2.0',
monomerLocatorIndex: 1,
monomerLocatorIndex: 2,
},
{
testDescription:
'36. Ambiguous alternatives base made of base(R1+R2+R3) and base(R1+R2) should result in base(R1+R2)',
HELMString: 'RNA1{R([nC6n5C],[nC65U])P}$$$$V2.0',
monomerLocatorIndex: 1,
monomerLocatorIndex: 2,
},
{
testDescription:
'37. Ambiguous mixed base made of base(R1) and base(R1) should result in base(R1)',
HELMString: 'RNA1{R([2imen2]+[5meC])P}$$$$V2.0',
monomerLocatorIndex: 1,
monomerLocatorIndex: 2,
},
{
testDescription:
'38. Ambiguous mixed base made of base(R1+R2) and base(R1+R2) should result in base(R1+R2)',
HELMString: 'RNA1{R([oC64m5]+[nC65U])P}$$$$V2.0',
monomerLocatorIndex: 1,
monomerLocatorIndex: 2,
},
{
testDescription:
'39. Ambiguous mixed base made of base(R1+R2+R3) and base(R1+R2+R3) should result in base(R1+R2+R3)',
HELMString: 'RNA1{R([nC6n5C]+[nC6n8A])P}$$$$V2.0',
monomerLocatorIndex: 1,
monomerLocatorIndex: 2,
},
{
testDescription:
'40. Ambiguous mixed base made of base(R1) and base(R1+R2+R3) should result in base(R1)',
HELMString: 'RNA1{R([2imen2]+[nC6n8A])P}$$$$V2.0',
monomerLocatorIndex: 1,
monomerLocatorIndex: 2,
},
{
testDescription:
'41. Ambiguous mixed base made of base(R1+R2) and base(R1) should result in base(R1)',
HELMString: 'RNA1{R([oC64m5]+[5meC])P}$$$$V2.0',
monomerLocatorIndex: 1,
monomerLocatorIndex: 2,
},
{
testDescription:
'42. Ambiguous mixed base made of base(R1+R2+R3) and base(R1+R2) should result in base(R1+R2)',
HELMString: 'RNA1{R([nC6n5C]+[nC65U])P}$$$$V2.0',
monomerLocatorIndex: 1,
monomerLocatorIndex: 2,
},
];

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