Testing III #522
Workflow file for this run
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| name: linux | |
| # Only build PRs, the main branch, and releases. | |
| on: | |
| pull_request: | |
| push: | |
| branches: | |
| - main | |
| - testing | |
| release: | |
| types: | |
| - published | |
| schedule: | |
| - cron: "14 14 20 * *" | |
| # Use bash by default in all jobs | |
| defaults: | |
| run: | |
| # Using "-l {0}" is necessary for conda environments to be activated | |
| # But this breaks on MacOS if using actions/setup-python: | |
| # https://github.com/actions/setup-python/issues/132 | |
| shell: bash | |
| # Cancel any previous run of the test job. | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| test: | |
| name: ${{ matrix.case.os }} py${{ matrix.case.python-version }} ${{ matrix.case.name }} | |
| runs-on: ${{ matrix.case.os }}-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu, ] # macos, windows] # Only Linux currently. | |
| case: | |
| # - python-version: "3.9" | |
| # name: minimal | |
| # os: ubuntu | |
| # conda: "'scipy=1.9' 'numba=0.53' 'numpy<2.0' 'empymod>=2.3'" | |
| # - python-version: "3.10" | |
| # name: full | |
| # os: ubuntu | |
| # conda: "numba scipy xarray h5py discretize matplotlib 'numpy<2.0' 'empymod>=2.3'" # tqdm | |
| # - python-version: "3.10" | |
| # name: plain | |
| # os: ubuntu | |
| # conda: "numba scipy 'numpy<2.0' 'empymod>=2.3'" | |
| # - python-version: "3.11" | |
| # name: plain | |
| # os: ubuntu | |
| # conda: "numba scipy 'numpy<2.0' 'empymod>=2.3'" | |
| - python-version: "3.11" | |
| name: full | |
| os: ubuntu | |
| conda: "numba scipy pygimli 'numpy<2.0' 'empymod>=2.3'" | |
| # conda: "numba scipy xarray tqdm h5py discretize matplotlib pygimli 'numpy<2.0' 'empymod>=2.3'" | |
| # - python-version: "3.12" | |
| # name: plain | |
| # os: ubuntu | |
| # conda: "numba scipy 'numpy<2.0' 'empymod>=2.3'" | |
| # - python-version: "3.12" | |
| # name: full | |
| # os: ubuntu | |
| # conda: "numba scipy xarray tqdm h5py discretize matplotlib 'numpy<2.0' 'empymod>=2.3'" | |
| env: | |
| # Used for coveralls flag | |
| OS: ${{ matrix.case.os }} | |
| PYTHON: ${{ matrix.case.python-version }} | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| # Need to fetch more than the last commit so that setuptools-scm can | |
| # create the correct version string. If the number of commits since | |
| # the last release is greater than this, the version still be wrong. | |
| # Increase if necessary. | |
| fetch-depth: 100 | |
| # The GitHub token is preserved by default but this job doesn't need | |
| # to be able to push to GitHub. | |
| persist-credentials: false | |
| # Need the tags so that setuptools-scm can form a valid version number | |
| - name: Fetch git tags | |
| run: git fetch origin 'refs/tags/*:refs/tags/*' | |
| - name: Setup miniconda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| python-version: ${{ matrix.case.python-version }} | |
| miniforge-version: "latest" | |
| miniforge-variant: Mambaforge | |
| use-mamba: true | |
| - name: Install dependencies | |
| shell: bash -l {0} | |
| run: | | |
| conda config --set always_yes yes --set changeps1 no | |
| conda config --show-sources | |
| conda config --show | |
| conda info -a | |
| conda install -c gimli -c conda-forge ${{ matrix.case.conda }} pytest pytest-cov pytest-console-scripts coveralls flake8 setuptools-scm | |
| - name: Conda list | |
| shell: bash -l {0} | |
| run: conda list | |
| # - name: Flake8 | |
| # shell: bash -l {0} | |
| # run: flake8 docs/ setup.py emg3d/ tests/ | |
| - name: Test with pytest | |
| shell: bash -l {0} | |
| run: | | |
| python -m pip install --no-build-isolation --no-deps . | |
| pytest --cov=emg3d -svv | |
| # - name: Coveralls | |
| # # [pin @develop@20230609] | |
| # uses: AndreMiras/coveralls-python-action@65c1672f0b8a201702d86c81b79187df74072505 | |
| # with: | |
| # parallel: true | |
| # flag-name: ${{ matrix.case.python-version }} ${{ matrix.case.name }} (${{ matrix.case.os }}) | |
| # | |
| # | |
| # coveralls_finish: | |
| # needs: test | |
| # runs-on: ubuntu-latest | |
| # steps: | |
| # - name: Coveralls Finished | |
| # # [pin @develop@20230609] | |
| # uses: AndreMiras/coveralls-python-action@65c1672f0b8a201702d86c81b79187df74072505 | |
| # with: | |
| # parallel-finished: true | |
| # | |
| # deploy: | |
| # needs: test | |
| # name: Deploy to PyPI | |
| # runs-on: ubuntu-latest | |
| # # Only from the origin repository, not forks; only main and tags. | |
| # if: github.repository_owner == 'emsig' && (github.ref == 'refs/heads/main' || startsWith(github.ref, 'refs/tags/')) | |
| # | |
| # steps: | |
| # # Checks-out your repository under $GITHUB_WORKSPACE | |
| # - name: Checkout | |
| # uses: actions/checkout@v4 | |
| # with: | |
| # # Need to fetch more than the last commit so that setuptools-scm can | |
| # # create the correct version string. If the number of commits since | |
| # # the last release is greater than this, the version will still be | |
| # # wrong. Increase if necessary. | |
| # fetch-depth: 100 | |
| # # The GitHub token is preserved by default but this job doesn't need | |
| # # to be able to push to GitHub. | |
| # persist-credentials: false | |
| # | |
| # # Need the tags so that setuptools-scm can form a valid version number | |
| # - name: Fetch git tags | |
| # run: git fetch origin 'refs/tags/*:refs/tags/*' | |
| # | |
| # - name: Setup Python | |
| # uses: actions/setup-python@v5 | |
| # with: | |
| # python-version: "3.9" | |
| # | |
| # - name: Install dependencies | |
| # run: | | |
| # python -m pip install --upgrade pip | |
| # python -m pip install build setuptools-scm | |
| # | |
| # - name: Build source and wheel distributions | |
| # if: github.ref == 'refs/heads/main' | |
| # run: | | |
| # # Change setuptools-scm local_scheme to "no-local-version" so the | |
| # # local part of the version isn't included, making the version string | |
| # # compatible with Test PyPI. | |
| # sed --in-place 's/"root"/"local_scheme":"no-local-version","root"/g' setup.py | |
| # | |
| # - name: Build source and wheel distributions | |
| # run: | | |
| # # Build source and wheel packages | |
| # python -m build | |
| # echo "" | |
| # echo "Generated files:" | |
| # ls -lh dist/ | |
| # | |
| # - name: Publish to Test PyPI | |
| # if: success() | |
| # uses: pypa/gh-action-pypi-publish@release/v1 | |
| # with: | |
| # user: __token__ | |
| # password: ${{ secrets.TEST_PYPI_PASSWORD }} | |
| # repository-url: https://test.pypi.org/legacy/ | |
| # # Allow existing releases on test PyPI without errors. | |
| # # NOT TO BE USED in PyPI! | |
| # skip-existing: true | |
| # | |
| # - name: Publish to PyPI | |
| # # Only for releases | |
| # if: success() && github.event_name == 'release' | |
| # uses: pypa/gh-action-pypi-publish@release/v1 | |
| # with: | |
| # user: __token__ | |
| # password: ${{ secrets.PYPI_PASSWORD }} |