[Auto-generated] Update dependencies (#822)

### Update dependencies

Automatically created PR from
[`ci/dependabot-updates`](https://github.com/emmo-repo/EMMOntoPy/tree/ci/dependabot-updates).

The PR is based on the ['CI - Update dependencies PR'
workflow](https://SINTEF.github.io/ci-cd/latest/workflows/ci_update_dependencies/)
in [SINTEF/ci-cd](https://github.com/SINTEF/ci-cd).

#### To do

- [ ] Check that the diff is sensible, and that tests and builds pass
with the new dependency versions.
- [ ] Make sure that the PR is **squash** merged, with a sensible commit
message.

---------

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Francesca L. Bleken <[email protected]>

.pre-commit-config.yaml

@@ -17,13 +17,13 @@ repos:
     args: [--markdown-linebreak-ext=md]
 
 - repo: https://github.com/ambv/black
-  rev: 24.10.0
+  rev: 25.1.0
   hooks:
   - id: black
     name: Blacken
 
 - repo: https://github.com/PyCQA/bandit
-  rev: '1.8.0'
+  rev: '1.8.2'
   hooks:
   - id: bandit
     args: [-r]
@@ -36,7 +36,7 @@ repos:
 #     exclude: ^tests/.*$
 
 - repo: https://github.com/SINTEF/ci-cd
-  rev: v2.8.3
+  rev: v2.9.0
   hooks:
   - id: docs-api-reference
     args:

demo/vertical/plot_ontology.py

@@ -1,7 +1,6 @@
 #!/usr/bin/env python3
 # -*- coding: utf-8 -*-
-"""Plots the user case ontology created with the script `define_ontology.py`.
-"""
+"""Plots the user case ontology created with the script `define_ontology.py`."""
 from ontopy import World
 
 

ontopy/utils.py

@@ -1,5 +1,4 @@
-"""Some generic utility functions.
-"""
+"""Some generic utility functions."""
 
 # pylint: disable=protected-access,invalid-name,redefined-outer-name
 # pylint: disable=import-outside-toplevel

tests/ontopy_tests/test_patch.py

@@ -1,6 +1,4 @@
-"""Tests Owlready2 patches implemented in ontopy/patch.py
-
-"""
+"""Tests Owlready2 patches implemented in ontopy/patch.py"""
 
 import re
 

tools/emmocheck

@@ -1,6 +1,5 @@
 #!/usr/bin/env python3
-"""Tool for checking that ontologies conform to EMMO conventions.
-"""
+"""Tool for checking that ontologies conform to EMMO conventions."""
 import sys
 import os
 

tools/ontoconvert

@@ -1,6 +1,5 @@
 #!/usr/bin/env python
-"""Converts file format of input ontology and write it to output file(s).
-"""
+"""Converts file format of input ontology and write it to output file(s)."""
 import argparse
 import warnings