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Moving to the new way of tagging tools in content #1249

Merged
merged 233 commits into from
Aug 18, 2023

Commits on Dec 8, 2022

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  2. remote theme

    bedroesb committed Dec 8, 2022
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  5. try out github actions

    bedroesb committed Dec 8, 2022
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Commits on Dec 14, 2022

  1. using gems

    bedroesb committed Dec 14, 2022
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  2. latest version

    bedroesb committed Dec 14, 2022
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  3. latest version

    bedroesb committed Dec 14, 2022
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Commits on Dec 15, 2022

  1. fixed version

    bedroesb committed Dec 15, 2022
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  2. dev banner

    bedroesb committed Dec 15, 2022
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  3. test with no branch variable

    bedroesb committed Dec 15, 2022
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Commits on Dec 16, 2022

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  3. GITHUB_BRANCH

    bedroesb committed Dec 16, 2022
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Commits on Dec 19, 2022

  1. test with branch

    bedroesb committed Dec 19, 2022
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  3. no dump in index

    bedroesb committed Dec 19, 2022
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Commits on Dec 21, 2022

  1. no branch var

    bedroesb committed Dec 21, 2022
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Commits on Dec 28, 2022

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  2. better IDs

    bedroesb committed Dec 28, 2022
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Commits on Dec 30, 2022

  1. start with demo

    bedroesb committed Dec 30, 2022
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Commits on Feb 6, 2023

  1. latest version

    bedroesb committed Feb 6, 2023
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  3. some fixes

    bedroesb committed Feb 6, 2023
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Commits on Feb 24, 2023

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Commits on Mar 8, 2023

  1. add dep

    bedroesb committed Mar 8, 2023
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  2. more github info

    bedroesb committed Mar 8, 2023
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  3. refname

    bedroesb committed Mar 8, 2023
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  5. fix related pages

    bedroesb committed Mar 8, 2023
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Commits on May 3, 2023

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Commits on May 4, 2023

  1. dep update

    bedroesb committed May 4, 2023
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Commits on May 22, 2023

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Commits on May 23, 2023

  1. new tools

    floradanna committed May 23, 2023
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  2. update tools

    bedroesb committed May 23, 2023
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  4. tools in domain pages

    floradanna committed May 23, 2023
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  5. typo fix

    floradanna committed May 23, 2023
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  6. update tools

    bedroesb committed May 23, 2023
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  8. some improv

    bedroesb committed May 23, 2023
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  9. tasks

    floradanna committed May 23, 2023
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Commits on May 24, 2023

  1. update tool assemblies

    smza committed May 24, 2023
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  2. Merge pull request #33 from smza/edit-tools

    update tool assemblies
    bedroesb authored May 24, 2023
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  3. temp fix table

    bedroesb committed May 24, 2023
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  4. tasks

    floradanna committed May 24, 2023
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  5. fix galaxy assembly

    bedroesb committed May 24, 2023
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  7. Update xnat_pic_assembly.md

    korbinib authored May 24, 2023
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  8. Update proteomics.md

    korbinib authored May 24, 2023
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  9. Update existing_data.md

    korbinib authored May 24, 2023
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  10. Update xnat_pic_assembly.md

    korbinib authored May 24, 2023
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  11. Update proteomics.md

    korbinib authored May 24, 2023
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  12. Update no_resources.md

    korbinib authored May 24, 2023
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  13. plant phenome

    smza committed May 24, 2023
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  14. Merge pull request #34 from smza/edit-tools

    plant phenome
    bedroesb authored May 24, 2023
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  15. Update existing_data.md

    korbinib authored May 24, 2023
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  16. Update xnat_pic_assembly.md

    korbinib authored May 24, 2023
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  17. Update proteomics.md

    korbinib authored May 24, 2023
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  18. Update existing_data.md

    korbinib authored May 24, 2023
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  19. revert changes

    Changes to be committed:
    	modified:   pages/national_resources/no_resources.md
    	modified:   pages/tool_assembly/xnat_pic_assembly.md
    	modified:   pages/your_domain/proteomics.md
    	modified:   pages/your_tasks/existing_data.md
    korbinib committed May 24, 2023
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  20. Revert "revert changes"

    This reverts commit fd338ff.
    korbinib committed May 24, 2023
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  21. Revert "Update existing_data.md"

    This reverts commit b7870fb.
    korbinib committed May 24, 2023
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  22. Revert "Update proteomics.md"

    This reverts commit 7028c0f.
    korbinib committed May 24, 2023
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  23. Revert "Update xnat_pic_assembly.md"

    This reverts commit 8520499.
    korbinib committed May 24, 2023
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  24. Revert "Update existing_data.md"

    This reverts commit 74cfe28.
    korbinib committed May 24, 2023
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  25. Revert "Update no_resources.md"

    This reverts commit 1d089c3.
    korbinib committed May 24, 2023
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  26. Revert "Update proteomics.md"

    This reverts commit 4c36ceb.
    korbinib committed May 24, 2023
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  27. Revert "Update xnat_pic_assembly.md"

    This reverts commit 2ff60ca.
    korbinib committed May 24, 2023
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  28. Revert "Update existing_data.md"

    This reverts commit 8385884.
    korbinib committed May 24, 2023
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  29. Revert "Update proteomics.md"

    This reverts commit fce63c8.
    korbinib committed May 24, 2023
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  30. Revert "Update xnat_pic_assembly.md"

    This reverts commit 400dc2b.
    korbinib committed May 24, 2023
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Commits on May 25, 2023

  1. tools

    floradanna committed May 25, 2023
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  3. Update xnat_pic_assembly.md

    bedroesb authored May 25, 2023
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  4. cleanup

    bedroesb committed May 25, 2023
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Commits on Jun 6, 2023

  1. update documentation

    bedroesb committed Jun 6, 2023
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  2. typo

    bedroesb committed Jun 6, 2023
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Commits on Jun 19, 2023

  1. update ref_to_main_resources

    bedroesb committed Jun 19, 2023
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  2. instance_of make use of ID

    bedroesb committed Jun 19, 2023
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  3. fix id

    bedroesb committed Jun 19, 2023
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  5. no table needed

    bedroesb committed Jun 19, 2023
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  6. sort natural

    bedroesb committed Jun 19, 2023
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Commits on Jun 21, 2023

  1. knetminer fix

    bedroesb committed Jun 21, 2023
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  2. knetminer fix

    bedroesb committed Jun 21, 2023
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Commits on Jun 23, 2023

  1. update xnat

    bedroesb committed Jun 23, 2023
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  2. update script

    bedroesb committed Jun 23, 2023
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  3. update description

    bedroesb committed Jun 23, 2023
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  4. latest version

    bedroesb committed Jun 23, 2023
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  5. add scripts to open issues

    bedroesb committed Jun 23, 2023
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  7. no spreadsheet

    bedroesb committed Jun 23, 2023
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  8. little fixes

    bedroesb committed Jun 23, 2023
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  9. add tools to transmed

    bedroesb committed Jun 23, 2023
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  10. more tool updates

    bedroesb committed Jun 23, 2023
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  11. transmed fix

    bedroesb committed Jun 23, 2023
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  12. add lumi

    bedroesb committed Jun 23, 2023
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Commits on Jun 26, 2023

  1. Update plant_phenomics_assembly.md

    add GNPIS in Repositories
    erlefloch authored Jun 26, 2023
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  2. bioexcel fixes

    bedroesb committed Jun 26, 2023
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  3. Update plant_phenomics.svg

    add GNPIS
    erlefloch authored Jun 26, 2023
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  4. no GnpIS

    bedroesb committed Jun 26, 2023
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  5. add GnpIS

    bedroesb committed Jun 26, 2023
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  6. Merge pull request #35 from erlefloch/patch-12

    update plant pheno tool assembly with GNPIS
    bedroesb authored Jun 26, 2023
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  8. no changes in national page

    bedroesb committed Jun 26, 2023
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  9. adding milestones

    bedroesb committed Jun 26, 2023
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Commits on Jun 27, 2023

  1. improved tools validator

    bedroesb committed Jun 27, 2023
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  2. update tools file

    bedroesb committed Jun 27, 2023
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  3. Update ifb_assembly.md

    Remove Data INRAE as it is replaced by Recherche Data Gouv
    erlefloch authored Jun 27, 2023
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  4. small fixes

    bedroesb committed Jun 27, 2023
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  6. Add files via upload

    replace data.inrae with recherche.data.gouv in the svg
    erlefloch authored Jun 27, 2023
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  7. check if id is present

    bedroesb committed Jun 27, 2023
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  8. Merge pull request #37 from erlefloch/patch-12

    Update ifb_assembly.md
    bedroesb authored Jun 27, 2023
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Commits on Jun 28, 2023

  1. Update data_analysis.md

    Add OpenStack as tool
    svedziok authored Jun 28, 2023
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  2. fix xnat pic

    bedroesb committed Jun 28, 2023
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  4. no icloud

    bedroesb committed Jun 28, 2023
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Commits on Jun 29, 2023

  1. Update existing_data.md

    Add tool links to 'ELIXIR core data resources' and 'Evidence & Conclusion Ontology'. The latter was mentioned already in the text but only with a direct link to external page, so I transformed it to a tool link.
    YvonneKallberg authored Jun 29, 2023
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  2. Update metadata_management.md

    Change link on how to create a codebook from external link to a tool link
    YvonneKallberg authored Jun 29, 2023
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  3. Update pages/your_tasks/metadata_management.md

    Update tool link for codebook
    
    Co-authored-by: Bert Droesbeke <[email protected]>
    YvonneKallberg and bedroesb authored Jun 29, 2023
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  4. Merge pull request #40 from YvonneKallberg/patch-15

    Update metadata_management.md
    bedroesb authored Jun 29, 2023
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Commits on Jul 3, 2023

  1. Update Human data page to add tool in text

    Add HumanMine tool in the text in Human Data page.
    lauportell authored Jul 3, 2023
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Commits on Jul 10, 2023

  1. Update fi_resources.md

    Iceabear should be removed from the list/metadata. It is not mentioned anywhere in the text and it currently has some maintenance issues and thus cannot be recommended.
    minnami authored Jul 10, 2023
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  2. Merge pull request #39 from YvonneKallberg/patch-14

    Update existing_data.md
    bedroesb authored Jul 10, 2023
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  3. Merge pull request #38 from svedziok/patch-3

    Update data_analysis.md
    bedroesb authored Jul 10, 2023
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  4. update id

    bedroesb committed Jul 10, 2023
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  5. Merge pull request #41 from minnami/patch-6

    Update fi_resources.md
    bedroesb authored Jul 10, 2023
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  8. Update human_data.md

    lauportell authored Jul 10, 2023
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  10. update human data

    bedroesb committed Jul 10, 2023
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  11. update documentation

    bedroesb committed Jul 10, 2023
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  12. typo

    bedroesb committed Jul 10, 2023
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Commits on Jul 11, 2023

  1. add missing tools in the text - issue 1316

    addressing missing tools based on elixir-europe#1316
    vildead authored Jul 11, 2023
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Commits on Jul 12, 2023

  1. Merge pull request #42 from vildead/patch-1

    add missing tools in the text - issue 1316
    bedroesb authored Jul 12, 2023
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  4. add ada-discovery-analytics

    bedroesb committed Jul 12, 2023
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Commits on Jul 13, 2023

  1. typo

    bedroesb committed Jul 13, 2023
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Commits on Jul 18, 2023

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Commits on Jul 19, 2023

  1. add tools

    floradanna authored Jul 19, 2023
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  2. Merge pull request #43 from floradanna/patch-7

    add tools to documentation task page
    bedroesb authored Jul 19, 2023
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  5. Update compliance_monitoring.md

    added: FAIR-Wizard and FAIRshake
    floradanna authored Jul 19, 2023
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  6. Merge pull request #44 from bedroesb/floradanna-patch-1

    Update compliance_monitoring.md
    bedroesb authored Jul 19, 2023
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  7. Update dm_coordination.md

    added: FAIR Implementation Profile and FIP Wizard
    floradanna authored Jul 19, 2023
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  8. Merge pull request #45 from bedroesb/floradanna-patch-2

    Update dm_coordination.md
    bedroesb authored Jul 19, 2023
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Commits on Jul 24, 2023

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  2. update to latest evrsion

    bedroesb committed Jul 24, 2023
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  4. add link to 4dn tools

    jburel committed Jul 24, 2023
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  5. link to resources

    jburel committed Jul 24, 2023
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  6. add missing dot

    jburel committed Jul 24, 2023
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  7. fix structure

    di-hardt committed Jul 24, 2023
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  8. add knowledgebases

    di-hardt committed Jul 24, 2023
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Commits on Jul 25, 2023

  1. Merge pull request #47 from di-hardt/proteomics-tool-ref-update

    update content for new tool linking
    bedroesb authored Jul 25, 2023
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  2. Update proteomics.md

    small changes and links added
    wittigue authored Jul 25, 2023
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  3. Merge pull request #49 from bedroesb/wittigue-patch-1

    Update proteomics.md
    bedroesb authored Jul 25, 2023
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  4. Merge pull request #48 from jburel/imaging_link

    update to use new tool linking
    bedroesb authored Jul 25, 2023
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  5. Update tool_and_resource_list.yml

    deleted tool "Base"
    changed link "OpenAIRE Explore"
    wittigue authored Jul 25, 2023
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  7. Update existing_data.md

    added OpenAIRE Explore
    wittigue authored Jul 25, 2023
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  8. Update existing_data.md

    added OpenAIRE Explore
    wittigue authored Jul 25, 2023
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  9. add new contributer

    di-hardt committed Jul 25, 2023
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  10. Merge pull request #50 from bedroesb/wittigue-patch-2-1

    Update tool_and_resource_list.yml
    bedroesb authored Jul 25, 2023
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  11. Merge pull request #51 from bedroesb/wittigue-patch-4

    Update existing_data.md
    bedroesb authored Jul 25, 2023
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Commits on Jul 26, 2023

  1. no PAA

    bedroesb committed Jul 26, 2023
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  3. taking out unneeded tools

    bedroesb committed Jul 26, 2023
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  4. add docker hub

    bedroesb committed Jul 26, 2023
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  5. adding some tools

    bedroesb committed Jul 26, 2023
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  6. no proteowizard

    bedroesb committed Jul 26, 2023
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  7. adding gitlab

    bedroesb committed Jul 26, 2023
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  8. adding openscienceframework

    bedroesb committed Jul 26, 2023
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  9. adding medeley data

    bedroesb committed Jul 26, 2023
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  10. latets evrsion

    bedroesb committed Jul 26, 2023
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  11. indentation

    bedroesb committed Jul 26, 2023
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  12. new version of plugin

    bedroesb committed Jul 26, 2023
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  13. shorten affiliation

    di-hardt committed Jul 26, 2023
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  14. Merge pull request #52 from di-hardt/contributor-dirk-winkelhardt

    Contributor dirk winkelhardt
    bedroesb authored Jul 26, 2023
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  15. latest plugin

    bedroesb committed Jul 26, 2023
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Commits on Aug 3, 2023

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Commits on Aug 7, 2023

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Commits on Aug 9, 2023

  1. Toxicology: add tools in text

    Add tools in the text for the toxicology page
    lauportell authored Aug 9, 2023
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  2. typo

    bedroesb committed Aug 9, 2023
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  3. Human data: add tools in the text

    Human data: add tools in the text
    lauportell authored Aug 9, 2023
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Commits on Aug 10, 2023

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Commits on Aug 11, 2023

  1. Update data_transfer.md

    all tools added
    floradanna authored Aug 11, 2023
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  2. fix double quotes

    bedroesb committed Aug 11, 2023
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Commits on Aug 14, 2023

  1. Update data_management_plan.md

    all other tools added
    floradanna authored Aug 14, 2023
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  2. Update data_management_plan.md

    missing -
    floradanna authored Aug 14, 2023
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  3. Update data_management_plan.md

    fix fip id
    floradanna authored Aug 14, 2023
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  4. Update licensing.md

    all tools added
    floradanna authored Aug 14, 2023
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  5. Update data_organisation.md

    cookiecutter added
    floradanna authored Aug 14, 2023
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  6. Update covid19_data_portal.md

    ELIXIR CDR added
    floradanna authored Aug 14, 2023
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  7. Update microbial_biotechnology.md

    all tools added
    floradanna authored Aug 14, 2023
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  8. Update rare_disease_data.md

    all tools added
    floradanna authored Aug 14, 2023
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Commits on Aug 15, 2023

  1. Update storage.md

    - inluding missing tools in the text according to the new tools handling
    - adding links to related RDMkit pages
    wittigue authored Aug 15, 2023
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  2. Update data_publication.md

    - added missing tools
    wittigue authored Aug 15, 2023
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Commits on Aug 16, 2023

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  3. adding publisso

    bedroesb committed Aug 16, 2023
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  4. Merge pull request #53 from bedroesb/floradanna-patch-3

    Update data_transfer.md
    bedroesb authored Aug 16, 2023
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  5. Merge pull request #55 from bedroesb/floradanna-patch-5

    Update licensing.md
    bedroesb authored Aug 16, 2023
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  6. Merge pull request #58 from bedroesb/floradanna-patch-8

    Update microbial_biotechnology.md
    bedroesb authored Aug 16, 2023
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  7. Merge pull request #54 from bedroesb/floradanna-patch-4

    Update data_management_plan.md
    bedroesb authored Aug 16, 2023
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  8. Merge pull request #57 from bedroesb/floradanna-patch-7

    Update covid19_data_portal.md
    bedroesb authored Aug 16, 2023
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  9. Merge pull request #56 from bedroesb/floradanna-patch-6

    Update data_organisation.md
    bedroesb authored Aug 16, 2023
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  10. Merge pull request #59 from bedroesb/floradanna-patch-9

    Update rare_disease_data.md
    bedroesb authored Aug 16, 2023
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  11. Merge pull request #61 from bedroesb/wittigue-patch-6

    Update data_publication.md
    bedroesb authored Aug 16, 2023
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  12. Merge pull request #60 from bedroesb/wittigue-patch-5

    Update storage.md
    bedroesb authored Aug 16, 2023
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Commits on Aug 17, 2023

  1. add bii

    bedroesb committed Aug 17, 2023
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  2. typo

    bedroesb committed Aug 17, 2023
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Commits on Aug 18, 2023

  1. adding tools

    bedroesb committed Aug 18, 2023
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  2. Merge pull request #63 from bedroesb/add-data-analysis-tools

    Adding missing tools
    bedroesb authored Aug 18, 2023
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  3. Merge pull request #62 from bedroesb/add-bioimage-tool

    Add bIII registry
    bedroesb authored Aug 18, 2023
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  5. latest version

    bedroesb committed Aug 18, 2023
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  7. adding more tools

    bedroesb committed Aug 18, 2023
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  8. add CATH

    bedroesb committed Aug 18, 2023
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  9. overwriting style

    bedroesb committed Aug 18, 2023
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  11. add news item

    bedroesb committed Aug 18, 2023
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