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chore: merge repositories into new branch (main) #163

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Commits on Jun 21, 2018

  1. travis

    aniewielska committed Jun 21, 2018
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  2. travis badge

    aniewielska authored Jun 21, 2018
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  3. codecov

    aniewielska committed Jun 21, 2018
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  4. codecov badge

    aniewielska authored Jun 21, 2018
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Commits on Jun 26, 2018

  1. maintenance: Use python's standard formatting

    autopep8 was used for applying the formatting,
    a few manual changes were made to make some changes more pallatable
    psafont committed Jun 26, 2018
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Commits on Jun 27, 2018

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Commits on Jun 28, 2018

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Commits on Jun 29, 2018

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Commits on Sep 17, 2018

  1. fixes: closing files & conns; regex bugs

    Now files and connections are more consistently closed.
    Most regular expressions produced bugs and have been replaced.
    Transput class now contains all the virtual functions that are to be
    inherited.
    Logging messages are lazy-loaded now.
    Uploading HTTP folders now tries to upload all the files, not just the
    last one found.
    Renamed some variables to make their purpose more obvious
    Stop raising exceptions for the time being as the rest of the code does
    not handle them, return the error code instead
    psafont committed Sep 17, 2018
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  2. maintenance: less biolerplate to close connections

    Use transputs as context managers to be less verbose for closing
    connections
    psafont committed Sep 17, 2018
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  3. maintenance: use enums instead of strings

    This way the code won't fail in subtle ways
    psafont committed Sep 17, 2018
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Commits on Sep 18, 2018

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Commits on Sep 19, 2018

  1. fix: convert from string to Enum

    Also added more debugging info
    psafont committed Sep 19, 2018
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Commits on Oct 2, 2018

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Commits on Oct 30, 2018

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Commits on Jan 21, 2019

  1. rm filer.py

    According to Ania, this is the old version that is not used anymore.
    tfga committed Jan 21, 2019
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Commits on Jan 22, 2019

  1. [#12] newTransput()

    tfga committed Jan 22, 2019
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  2. [#12] assertThrows()

    tfga committed Jan 22, 2019
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Commits on Jan 23, 2019

  1. [#12] FileTransput.download_file()

    TODO It's still using the host path. This has to be translated to a path inside the container.
    tfga committed Jan 23, 2019
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  2. [#12] containerPath()

    tfga committed Jan 23, 2019
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  3. [#12] validatePath()

    tfga committed Jan 23, 2019
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Commits on Jan 24, 2019

  1. [#12] ParserTest.test_defaults()

    tfga committed Jan 24, 2019
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  2. [#12] --localKubeConfig

    tfga committed Jan 24, 2019
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Commits on Jan 25, 2019

  1. dockerBuild

    tfga committed Jan 25, 2019
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  2. dockerRun

    tfga committed Jan 25, 2019
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  3. [#12] ren transput_filer.py => filer.py (continued...)

    I forgot to rename in one of the tests.
    tfga committed Jan 25, 2019
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  5. init

    tfga committed Jan 25, 2019
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Commits on Jan 28, 2019

  1. install

    tfga committed Jan 28, 2019
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  4. dockerBuild:

    - moved to scripts/
    - it was always executing 'taskmaster' (hard-coded)
    tfga committed Jan 28, 2019
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  5. dockerRun: moving to scripts/

    tfga committed Jan 28, 2019
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  6. dockerRun: forwarding cmd line args to the image.

    Before, they were simply discarded.
    tfga committed Jan 28, 2019
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Commits on Jan 29, 2019

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  2. scripts/run

    tfga committed Jan 29, 2019
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Commits on Feb 1, 2019

  1. [#12] install: no longer creating links

    Why?
    Because that way, './taskmaster' wouldn't run the current code: it would run _the last installed code_ ('pip install .').
    I.e. one more thing for you to remember.
    If you forgot about this, it could easily lead to hours of head scratching and fruitless debugging.
    tfga committed Feb 1, 2019
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Commits on Feb 4, 2019

  1. [#12] Adding mount to CONTAINER_BASE_PATH ('/transfer')

    * test_mounts
    * test_run_task
    tfga committed Feb 4, 2019
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  3. [#12] mount: the 'volumes' part

    tfga committed Feb 4, 2019
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Commits on Feb 5, 2019

  1. [#12] /transfer mount: minor errors in the spec

    * 'hostPath' : { 'path' : '/transferAtNode' }
    * .append() => .extend()
    tfga committed Feb 5, 2019
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  2. run: deleting everything before + examples/

    (everything = pods + jobs + pvc)
    tfga committed Feb 5, 2019
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  3. [#12] pprint

    tfga committed Feb 5, 2019
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Commits on Feb 6, 2019

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  4. Newer surefire plugin?

    aniewielska committed Feb 6, 2019
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Commits on Feb 8, 2019

  1. [#12] FileTransput.upload_dir()

    tfga committed Feb 8, 2019
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Commits on Feb 11, 2019

  1. [#12] upload/download methods: refactoring (transfer())

        def download_file(self): self.transfer(shutil.copy      , self.urlContainerPath , self.path)
        def upload_dir(self):    self.transfer(shutil.copytree  , self.path             , self.urlContainerPath)
    tfga committed Feb 11, 2019
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  2. [#12] 'file:' protocol disabled if any of (HOST_BASE_PATH, CONTAINER_…

    …BASE_PATH) is undefined.
    tfga committed Feb 11, 2019
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  3. [#12] transfer mount: making it optional

    The relevant conf is added to filer spec only if both (HOST_BASE_PATH, CONTAINER_BASE_PATH) are defined.
    tfga committed Feb 11, 2019
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  4. [#12] FileTransput.upload_file()

    tfga committed Feb 11, 2019
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  6. run: parameterizing jsonFile

    tfga committed Feb 11, 2019
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Commits on Feb 12, 2019

  1. [#12] copyDir()

    Limitation of shutil.copytree:
    
    > The destination directory, named by dst, must not already exist; it will be created as well as missing parent directories.
    tfga committed Feb 12, 2019
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Commits on Feb 15, 2019

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Commits on Feb 20, 2019

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Commits on Feb 21, 2019

  1. [#12] Fix: TRANSFER_VOLUME_NAME => TRANSFER_PVC_NAME

    I parameterized the wrong constant. It should have been 'transfer-pvc' -- not 'transfer-volume'.
    tfga committed Feb 21, 2019
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Commits on Feb 22, 2019

  1. [#12] --pull-policy-always

    tfga committed Feb 22, 2019
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  3. [#12] --pull-policy-always: binding cmd line arg => what ends up in F…

    …iler()
    
    Plus: changed Filer() param from string => boolean.
    tfga committed Feb 22, 2019
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Commits on Oct 18, 2019

  1. Removing Python 2 support

    Dropping Python 2 support from the project:
    - setup.py no longer advertises Python 2 in supported interpreters
    - tox.ini does not use py27 environment
    - renamed some unit tests to be automatically picked up by pytest
    - pytest is meant to be used through tox (not from setup.py) for unit tests
    - removed unnecessary Python 2 dependencies (future, unittest2, enum34)
    - bumped up kubernetes to 6.1.0 because of syntax error when using 5.0.0 in Python 3.7
    - using entry points instead of script names (renamed filer.py to filer)
    Zcowyzrg committed Oct 18, 2019
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  3. Building Docker images with Python 3.7

    - changed the base image to Alpine 3.10 with Python 3.7.
    - two staged build: (1) build wheel (2) install wheel and its dependencies
    - system-dependent Python directory layout knowlegde is no longer needed
    - docker will now ignore expensive .tox and other build directories while building images
    - image entrypoints edited to match "filer" and "taskmaster" installed binaries
    Zcowyzrg committed Oct 18, 2019
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Commits on Oct 21, 2019

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Commits on Oct 27, 2019

  1. Docker WORKDIR fixes, CI improvements

    - Removed WORKDIR from Dockerfiles
    - Python 3.7 added to Travis
    - Added extra Pylint step to fail on errors (E) only
    Zcowyzrg committed Oct 27, 2019
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Commits on Apr 16, 2020

  1. New Elixir group format

    aniewielska committed Apr 16, 2020
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Commits on May 18, 2020

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  2. Merge pull request #4 from EMBL-EBI-TSI/elixir-groups

    Elixir groups
    aniewielska authored May 18, 2020
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Commits on May 19, 2020

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Commits on May 27, 2020

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Commits on Jun 3, 2020

  1. Merge pull request #5 from EMBL-EBI-TSI/extra-secrets

    Global secrets for executors
    aniewielska authored Jun 3, 2020
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Commits on Jun 16, 2020

  1. Allow changing the default filer image name using TESK_API_TASKMASTER…

    …_FILER_IMAGE_NAME environment variable
    lvarin committed Jun 16, 2020
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  2. Add tests for new parameter

    lvarin committed Jun 16, 2020
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  4. Merge pull request #14 from Zcowyzrg/py27remove

    Remove Python 2 support
    aniewielska authored Jun 16, 2020
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Commits on Jun 17, 2020

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  2. Merge pull request #17 from EMBL-EBI-TSI/extra-secrets

    Allow volumes (e.g. secrets) in the executor spec
    aniewielska authored Jun 17, 2020
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Commits on Jun 22, 2020

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Commits on Jun 23, 2020

  1. Merge pull request #16 from lvarin/filer_image_name

    Allow changing the default filer image name using -fn
    aniewielska authored Jun 23, 2020
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Commits on Jun 30, 2020

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  3. Fix indentation, add one space

    lvarin committed Jun 30, 2020
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  4. Fix and add test

    Now a different function is used in the code.
    Also a couple of tests were added to increase coverage
    lvarin committed Jun 30, 2020
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Commits on Jul 6, 2020

  1. fix(ftp): stopped ftp errors silencing

    FTP errors were not propagated, resulting in jobs completing while FTP errors were present
    
    (#20)
    stikos committed Jul 6, 2020
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  2. fixed spacing

    stikos committed Jul 6, 2020
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Commits on Jul 7, 2020

  1. feat(api): variable jobs backoff limits

    By defining new environment variables, TESK_API_FILER_ENVIRONMENT_BACKOFF_LIMIT and TESK_API_EXECUTOR_ENVIRONMENT_BACKOFF_LIMIT, the number of a retires before a job fails can be explicitly set
    stikos committed Jul 7, 2020
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  2. env vars renaming

    stikos committed Jul 7, 2020
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Commits on Jul 8, 2020

  1. bug fix: ImagePullErr

    cibinsb committed Jul 8, 2020
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  2. Update job.py

    cibinsb authored Jul 8, 2020
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Commits on Jul 9, 2020

  1. Add support to netrc in filer.py.

    If the environment variable 'NETRC_SECRET_NAME' is present, and the
    content of the secret is a valid netrc file, it will be used for
    authentication.
    lvarin committed Jul 9, 2020
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Commits on Jul 13, 2020

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Commits on Jul 14, 2020

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Commits on Jul 15, 2020

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Commits on Jul 17, 2020

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  2. Merge pull request #25 from EMBL-EBI-TSI/localfile-regression

    Fix local filesystem regression of error checking
    aniewielska authored Jul 17, 2020
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Commits on Jul 21, 2020

  1. Quick and dirty fix, took a while to find the spot, buit it fixes the…

    … scientific notation bug and the too small memory bug
    lvarin committed Jul 21, 2020
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Commits on Jul 29, 2020

  1. Merge branch 'variable-backoff-limit' of git://github.com/stikos/tesk…

    …-core into stikos-variable-backoff-limit
    aniewielska committed Jul 29, 2020
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  3. String/int conversion

    aniewielska committed Jul 29, 2020
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  5. Clarify passthrough of env vars

    TESK API passes variables with a specific prefix to taskmaster, but the prefix is stripped.
    aniewielska authored Jul 29, 2020
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Commits on Jul 31, 2020

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  2. Accept #23 - imagePullError

    aniewielska committed Jul 31, 2020
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Commits on Aug 5, 2020

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  2. Merge pull request #26 from cibinsb/testing_taskmaster

    More unittesting
    aniewielska authored Aug 5, 2020
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Commits on Aug 6, 2020

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Commits on Aug 12, 2020

  1. s3 credentials through secrets

    First try, untested code
    stikos committed Aug 12, 2020
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  2. fix for s3 credentials through secret

    Tested and working. Secret name is hardcoded.
    stikos committed Aug 12, 2020
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  3. add extract endpoint utility

    Since the 'endpoint_url' parameter inside the aws config file is not handled by boto, we need a simple utility module to extract it.
    stikos committed Aug 12, 2020
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  4. utility improvement

    Improvements for the extract_endpoint utility
    stikos committed Aug 12, 2020
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  6. fixed test_config dir

    stikos committed Aug 12, 2020
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Commits on Aug 18, 2020

  1. Merge pull request #9 from lvarin/fix_memory

    Quick and dirty fix to scientific notation problem and 0 ram requirements (support for Nextflow, but worth having anyway, until we bump K8s client version)
    aniewielska authored Aug 18, 2020
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  2. Merge Nextflow fixes #19

    aniewielska committed Aug 18, 2020
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  6. Fix UnboundLocalError

    aniewielska committed Aug 18, 2020
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Commits on Aug 25, 2020

  1. enrich filer tests

    Some simple unit tests
    
    test additions
    
    additional tests (pytest)
    
    Created more tests for ftp filer operations with pytest in a separate file
    
    additional tests for ftp, http
    
    removed print statement
    
    updated setup.py test dependencies
    
    enable Travis
    
    filer unit tests improvements
    
    Files are no longer created during tests, enhanced testing for ftp_download
    
    tests fixes
    
    removed file exists test
    
    Removed f-strings for python3.5 compliance
    
    http upload dir test
    
    add fs fixture
    
    correct fixture name
    
    added fs in test deps
    
    ignore calls order
    
    test for ftp upload dir
    
    add pytest config
    
    mock ftplib connect
    
    added ftp download dir test
    
    removed ftpserver.stop and redundant login, connect
    
    removed unnecessary dependencies
    
    filer tests enhancements
    
    tests adjustments for rebase
    
    file creation assertion & commented code removal
    
    assert mock_open called_with()
    
    fixed duplicate code issue
    stikos committed Aug 25, 2020
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  2. feat: dynamic storage provisioning

    The storage class used is now configurable through the use of the TESK_API_TASKMASTER_ENVIRONMENT_STORAGE_CLASS_NAME environment variable. If no value is provided, the default storage class will be used.
    
    (#111)
    stikos committed Aug 25, 2020
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  3. Merge pull request #24 from stikos/filer-tests

    Filer tests
    aniewielska authored Aug 25, 2020
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  4. Move HOME for .netrc (#32)

    And we will move HOME for .netrc to fix #31
    aniewielska authored Aug 25, 2020
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Commits on Sep 8, 2020

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  3. Bump urllib3 from 1.22 to 1.24.2

    Bumps [urllib3](https://github.com/urllib3/urllib3) from 1.22 to 1.24.2.
    - [Release notes](https://github.com/urllib3/urllib3/releases)
    - [Changelog](https://github.com/urllib3/urllib3/blob/master/CHANGES.rst)
    - [Commits](urllib3/urllib3@1.22...1.24.2)
    
    Signed-off-by: dependabot[bot] <[email protected]>
    dependabot[bot] authored and aniewielska committed Sep 8, 2020
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  4. added more testcases

    cibinsb committed Sep 8, 2020
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  5. Merge pull request #30 - improve tests further

    Testing Job.py
    aniewielska authored Sep 8, 2020
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Commits on Sep 11, 2020

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  2. Merge pull request #29 from stikos/s3-creds-test

    Support S3 credentials configuration through secrets
    aniewielska authored Sep 11, 2020
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Commits on Sep 15, 2020

  1. Adding s3 support using boto3

    cibinsb committed Sep 15, 2020
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  2. fixing bug in testcases

    cibinsb committed Sep 15, 2020
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Commits on Sep 16, 2020

  1. bug fix in tests

    cibinsb committed Sep 16, 2020
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  2. bug fix

    cibinsb committed Sep 16, 2020
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  4. downgrading boto3

    cibinsb committed Sep 16, 2020
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Commits on Sep 17, 2020

  1. Merge pull request #28 from cibinsb/s3_feature

    S3 feature
    aniewielska authored Sep 17, 2020
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Commits on Sep 22, 2020

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Commits on Nov 18, 2020

  1. big fix

    cibinsb authored and Cibin Sadasivan Baby committed Nov 18, 2020
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Commits on Nov 24, 2020

  1. Allow unit tests to run under python3.8

    Justin Clark-Casey committed Nov 24, 2020
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Commits on Nov 30, 2020

  1. Remove Python3.5 support from unit tests

    Justin Clark-Casey committed Nov 30, 2020
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  2. Add Python3.8 to travis testing and remove 3.5

    Justin Clark-Casey committed Nov 30, 2020
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  3. Merge pull request #36 from justincc/run-unit-tests-with-python3.8

    Allow unit tests to run under python3.8
    aniewielska authored Nov 30, 2020
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  4. Merge pull request #35 from cibinsb/storage_class_error

    Bug Fix: When polling pod.status.start_time.
    aniewielska authored Nov 30, 2020
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Commits on Dec 3, 2020

  1. Updating taskmaster.py, job.py and pvc.py

    cibinsb authored and Cibin Sadasivan Baby committed Dec 3, 2020
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  2. adding testcases and condition to check particular exceptions

    Cibin Sadasivan Baby committed Dec 3, 2020
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  3. more logging

    Cibin Sadasivan Baby committed Dec 3, 2020
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Commits on Dec 8, 2020

  1. Merge pull request #37 from cibinsb/improving_Taskmaster

    Enabling taskmaster process run more than once (for instance in case of transient error). It should resume execution where it finished, based on state of objects (pvc, filers and executors) in K8s API.
    aniewielska authored Dec 8, 2020
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Commits on Mar 24, 2021

  1. Link GA4GH TES

    aniewielska committed Mar 24, 2021
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Commits on Mar 29, 2021

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  2. Remove spec and old API

    aniewielska committed Mar 29, 2021
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Commits on Mar 30, 2021

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  2. Merge pull request #17 from EMBL-EBI-TSI/tes-1

    TES 1.0 compatibility
    aniewielska authored Mar 30, 2021
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Commits on Mar 31, 2021

  1. Tests for TRS

    aniewielska committed Mar 31, 2021
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Commits on Apr 6, 2021

  1. Package cleanup

    aniewielska committed Apr 6, 2021
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  2. Package rearrange - K8s

    aniewielska committed Apr 6, 2021
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  3. Merge pull request #20 from EMBL-EBI-TSI/package-rearrange

    Package rearrange
    aniewielska authored Apr 6, 2021
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Commits on Apr 9, 2021

  1. Service info test

    aniewielska committed Apr 9, 2021
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  2. Merge pull request #22 from EMBL-EBI-TSI/service-info

    Service info
    aniewielska authored Apr 9, 2021
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Commits on Apr 12, 2021

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Commits on Jun 1, 2021

  1. Bump urllib3 from 1.24.2 to 1.26.5

    Bumps [urllib3](https://github.com/urllib3/urllib3) from 1.24.2 to 1.26.5.
    - [Release notes](https://github.com/urllib3/urllib3/releases)
    - [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst)
    - [Commits](urllib3/urllib3@1.24.2...1.26.5)
    
    ---
    updated-dependencies:
    - dependency-name: urllib3
      dependency-type: direct:production
    ...
    
    Signed-off-by: dependabot[bot] <[email protected]>
    dependabot[bot] authored Jun 1, 2021
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Commits on Nov 8, 2021

  1. Upgrade io.kubernetes library to v11.0.1. Changes needed:

        - Model objects where moved to a different package
        - Memory and CPU request is defined using Quantity and not String
        - Some functions got more (optional) parameters
    lvarin committed Nov 8, 2021
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Commits on Nov 15, 2021

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Commits on Nov 23, 2021

  1. Merge pull request #28 from lvarin/guava-30.0-jre

    Upgrade com.google.guava to v30.0-jre
    zagganas authored Nov 23, 2021
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Commits on Dec 1, 2021

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  2. Merge pull request #38 from elixir-cloud-aai/dependabot/pip/urllib3-1…

    ….26.5
    
    Bump urllib3 from 1.24.2 to 1.26.5
    zagganas authored Dec 1, 2021
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Commits on Dec 7, 2021

  1. Merge pull request #33 from stikos/111-configurable-pvc

    feat: customizable storage class
    lvarin authored Dec 7, 2021
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Commits on Dec 20, 2021

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Commits on Jan 24, 2022

  1. Add tesk-core-filer workflow

    Milan committed Jan 24, 2022
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  2. Add taskmaster workflow

    Milan committed Jan 24, 2022
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  3. Fix UID 1000

    Milan committed Jan 24, 2022
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  4. Add user 100 to filer and taskmaster

    Milan committed Jan 24, 2022
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Commits on Feb 15, 2022

  1. Merge pull request #25 from elixir-cloud-aai/dependabot/maven/io.kube…

    …rnetes-client-java-11.0.1
    
    Bump client-java from 1.0.0-beta1 to 11.0.1
    zagganas authored Feb 15, 2022
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Commits on Feb 23, 2022

  1. Switch to GitHub Actions instead of Travis CI (#33)

    * Added workflow files
    * Added code coverage to checks
    * Added synchronize event for PRs
    zagganas authored Feb 23, 2022
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  2. Add junit deps

    lvarin committed Feb 23, 2022
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  6. Add Mock for LimitRange API

    lvarin committed Feb 23, 2022
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  10. Merge pull request #26 from lvarin/LimitRange-query

    Limit range query
    zagganas authored Feb 23, 2022
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  12. Add junit deps

    lvarin committed Feb 23, 2022
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  14. Add two properties to the file 'application.properties' so the new ve…

    …rsions are configured properly
    lvarin committed Feb 23, 2022
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  15. Fix missing tag

    lvarin committed Feb 23, 2022
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Commits on Aug 16, 2022

  1. Adding missing quotes

    lvarin committed Aug 16, 2022
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  2. Merge pull request #41 from lvarin/fix-cancel

    Adding missing quotes
    sgalpha01 authored Aug 16, 2022
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Commits on Nov 1, 2022

  1. Fix500 exponent 18 (#43)

    * Fix space
    
    * Add more and better caches to exceptions
    
    * Convert value with only 6 decimals
    
    * Remove untested catch clauses
    
    * Remove untested catch clauses
    
    * Remove untested catch clauses
    lvarin authored Nov 1, 2022
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Commits on Dec 1, 2022

  1. Remove v3.6, add v3.7

    lvarin authored Dec 1, 2022
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Commits on Dec 29, 2022

  1. ci: add publish Docker workflow (#45)

    Co-authored-by: Milan <[email protected]>
    lvarin and Milan authored Dec 29, 2022
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Commits on Jan 9, 2023

  1. Upgrade versions of modules

    lvarin committed Jan 9, 2023
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  2. Upgrade versions of modules

    lvarin committed Jan 9, 2023
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  3. Merge pull request #40 from elixir-cloud-aai/testing-gh-action

    ci: add GitHub Actions workflows
    uniqueg authored Jan 9, 2023
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Commits on Jan 12, 2023

  1. Update pom.xml

    Co-authored-by: Martin Kuba <[email protected]>
    lvarin and martin-kuba authored Jan 12, 2023
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  2. Update pom.xml

    Co-authored-by: Martin Kuba <[email protected]>
    lvarin and martin-kuba authored Jan 12, 2023
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Commits on Jan 13, 2023

  1. Merge pull request #29 from lvarin/upgrade-org.springframework.boot-2…

    ….6.1
    
    Upgrade to org.springframework.boot to v2.6.1
    martin-kuba authored Jan 13, 2023
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Commits on Jan 17, 2023

  1. Add securityContext settings (#46)

    * Add securityContext settings
    
    * Fix tests
    xhejtman authored Jan 17, 2023
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Commits on Jan 24, 2023

  1. Configmap (#47)

    * Use configmap for JSON_INPUT
    
    Signed-off-by: Lukas Hejtmanek <[email protected]>
    
    * Fix basic tests
    
    Signed-off-by: Lukas Hejtmanek <[email protected]>
    
    * Fix integration tests
    
    Signed-off-by: Lukas Hejtmanek <[email protected]>
    
    Signed-off-by: Lukas Hejtmanek <[email protected]>
    xhejtman authored Jan 24, 2023
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  2. fix: api-docs JSON example (#30)

    * Add junit deps
    
    * Fix api-docs JSON example
    
    The api-docs json definition of the API was not passing the JSON parsing. One of the examples (in colunm ~1580, with text us-west-1), needed quotes
    
    * Upgrade springfox-swagger to fix swagger API deffinition
    
    * Few other changes to make it more compatible
    
    * Fix missing dependencies
    lvarin authored Jan 24, 2023
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Commits on Oct 18, 2023

  1. Bump urllib3 from 1.26.5 to 1.26.18

    Bumps [urllib3](https://github.com/urllib3/urllib3) from 1.26.5 to 1.26.18.
    - [Release notes](https://github.com/urllib3/urllib3/releases)
    - [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst)
    - [Commits](urllib3/urllib3@1.26.5...1.26.18)
    
    ---
    updated-dependencies:
    - dependency-name: urllib3
      dependency-type: direct:production
    ...
    
    Signed-off-by: dependabot[bot] <[email protected]>
    dependabot[bot] authored Oct 18, 2023
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Commits on Oct 24, 2023

  1. Fix swagger UI (#51)

    * Downgrade springfox-swagger.version for tests. Do not use this
    
    * Followed https://github.com/springfox/springfox\#migrating-from-earlier-snapshot
    
    * Added Guava back
    lvarin authored Oct 24, 2023
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  2. Update gha, docker login (#54)

    Co-authored-by: Tristan <[email protected]>
    trispera and trispera authored Oct 24, 2023
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Commits on Nov 6, 2023

  1. Bump guava from 30.0-jre to 32.0.0-jre (#50)

    Bumps [guava](https://github.com/google/guava) from 30.0-jre to 32.0.0-jre.
    - [Release notes](https://github.com/google/guava/releases)
    - [Commits](https://github.com/google/guava/commits)
    
    ---
    updated-dependencies:
    - dependency-name: com.google.guava:guava
      dependency-type: direct:production
    ...
    
    Signed-off-by: dependabot[bot] <[email protected]>
    Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
    dependabot[bot] authored Nov 6, 2023
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Commits on Dec 7, 2023

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  3. Fix quote

    lvarin committed Dec 7, 2023
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  4. Fix config

    lvarin committed Dec 7, 2023
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  5. Update how endpoint is handle

    trispera authored and lvarin committed Dec 7, 2023
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  6. Fix some tests

    lvarin committed Dec 7, 2023
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  7. Upgrade boto3 and tests

    lvarin committed Dec 7, 2023
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  8. Add boto3 client mock

    lvarin committed Dec 7, 2023
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Commits on Dec 11, 2023

  1. Merge pull request #46 from elixir-cloud-aai/regexp-improve

    Improve S3 URL support and others
    trispera authored Dec 11, 2023
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  3. Merge pull request #43 from elixir-cloud-aai/dependabot/pip/urllib3-1…

    ….26.18
    
    Bump urllib3 from 1.26.5 to 1.26.18
    lvarin authored Dec 11, 2023
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Commits on Dec 13, 2023

  1. Make a bit better the scripts

    lvarin committed Dec 13, 2023
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Commits on Dec 14, 2023

  1. Merge pull request #47 from elixir-cloud-aai/improve-local-build

    Make a bit better the scripts
    trispera authored Dec 14, 2023
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Commits on May 9, 2024

  1. Merge remote-tracking branch 'tesk-core/master'

    # Conflicts:
    #	.gitignore
    #	.travis.yml
    #	LICENSE
    #	MANIFEST.in
    #	README.md
    #	charts/tesk/templates/openshift/oc-route.yaml
    #	cloudbuild.yaml
    #	cloudbuild_testing.yaml
    #	documentation/img/TESKlogo.png
    #	documentation/img/TESKlogowfont.png
    #	setup.py
    JaeAeich committed May 9, 2024
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  2. Chart and doc updates (#144)

    * Chart and doc updates
    
    - Add securityContext. Remove of Ingress deployment in values.yaml
    - Update Ingress rules apiVersion
    - Update README and deployment documentation
    - Update condition for OpenShift Route
    
    * Enable ingress.rules
    
    * Add limits & requests
    trispera authored and JaeAeich committed May 9, 2024
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  3. Fix links to deployment.md (previously deployment_new.md) (#147)

    * WIP: Update GitHub Actions workflow
    
    * Fix links to deployment.md (previously deployment_new.md)
    trispera authored and JaeAeich committed May 9, 2024
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