Update and move from "ekplektoR" to "rete"

.gitignore

@@ -1,4 +1,37 @@
-.Rproj.user
+# History files
 .Rhistory
-.RData
-.Ruserdata
+.Rapp.history
+
+# User profile
+.myProfile.R
+
+# Session Data files
+#.RData
+
+# Example code in package build process
+*-Ex.R
+
+# Output files from R CMD build
+/*.tar.gz
+
+# Output files from R CMD check
+/*.Rcheck/
+
+# RStudio files
+.Rproj.user/
+
+# produced vignettes
+vignettes/*.html
+vignettes/*.pdf
+
+# OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3
+.httr-oauth
+
+# knitr and R markdown default cache directories
+/*_cache/
+/cache/
+
+# Temporary files created by R markdown
+*.utf8.md
+*.knit.md
+.Rproj.user

DESCRIPTION

@@ -1,10 +1,10 @@
-Package: ekplektoR
+Package: rete
 Type: Package
 Title: Network Analysis for Cell- and Systems Biology
 Version: 0.1.0
 Author: Boris Steipe et al.
 Maintainer: Boris Steipe <[email protected]>
-Description: ekplektor combines a workflow for affected-subnetwork discovery in
+Description: rete combines a workflow for affected-subnetwork discovery in
     cancer genome data and analysis tools.
 License: GPL-3
 Encoding: UTF-8

README

@@ -1,4 +1,4 @@
-ekplektoR
+rete
 
 Network topology analysis
 
@@ -32,6 +32,6 @@ DO NOT SUBMIT CODE that does not pass without error, warnings and notes.
 -----------------------------------------------
 
 Load the package (outside of this project) with:
-   devtools::install_github("hyginn/ekplektoR")
+   devtools::install_github("hyginn/rete")
 
 

ekplektoR.Rproj → rete.Rproj

@@ -12,6 +12,7 @@ Encoding: UTF-8
 RnwWeave: knitr
 LaTeX: XeLaTeX
 
+AutoAppendNewline: Yes
 StripTrailingWhitespace: Yes
 
 BuildType: Package

tests/testthat.R

@@ -1,4 +1,4 @@
 library(testthat)
-library(ekplektoR)
+library(rete)
 
-test_check("ekplektoR")
+test_check("rete")