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Merge branch 'release/0.6'
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bill-baumgartner committed Jan 25, 2016
2 parents 37c491f + 599f434 commit f92f444
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14 changes: 8 additions & 6 deletions README.md
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Expand Up @@ -9,17 +9,19 @@ Kevin M Livingston, Michael Bada, William A Baumgartner, Lawrence E Hunter
BMC Bioinformatics (accepted)
```

## Use with Java 1.8
## Development
This project follows the Git-Flow approach to branching as originally described [here](http://nvie.com/posts/a-successful-git-branching-model/).
To facilitate the Git-Flow branching approach, this project makes use of the [jgitflow-maven-plugin](https://bitbucket.org/atlassian/jgit-flow) as described [here](http://george-stathis.com/2013/11/09/painless-maven-project-releases-with-maven-gitflow-plugin/).

Code in the [master branch](https://github.com/UCDenver-ccp/datasource/tree/master) reflects the latest release of this library. Code in the [development](https://github.com/UCDenver-ccp/datasource/tree/development) branch contains the most up-to-date version of this project.

Note: This code was developed using **Java 1.7**. There have been reports that
the project won't build using **Java 1.8**.

## Maven signature if only using the file parser API
```xml
<dependency>
<groupId>edu.ucdenver.ccp</groupId>
<artifactId>datasource-fileparsers</artifactId>
<version>0.5</version>
<version>0.6</version>
</dependency>

<repository>
Expand All @@ -33,7 +35,7 @@ the project won't build using **Java 1.8**.
<dependency>
<groupId>edu.ucdenver.ccp</groupId>
<artifactId>datasource-rdfizer</artifactId>
<version>0.5</version>
<version>0.6</version>
</dependency>

<repository>
Expand Down Expand Up @@ -159,4 +161,4 @@ arabidopsis, and zebrafish), use:
When a taxon-aware file parser is used, some extra data is downloaded to ensure
that the mappings from biological concepts to taxon identifiers are
present. This download can be time consuming due to one of the files being very
large, but it is a one-time cost.
large, but it is a one-time cost.
12 changes: 8 additions & 4 deletions datasource-fileparsers/pom.xml
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@@ -1,14 +1,18 @@
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<parent>
<artifactId>datasource</artifactId>
<groupId>edu.ucdenver.ccp</groupId>
<version>0.6-SNAPSHOT</version>
<version>0.6</version>
</parent>
<artifactId>datasource-fileparsers</artifactId>

<dependencies>
<dependency>
<groupId>org.projectlombok</groupId>
<artifactId>lombok</artifactId>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>org.projectlombok</groupId>
<artifactId>lombok</artifactId>
Expand Down Expand Up @@ -117,4 +121,4 @@
</plugin>
</plugins>
</build>
</project>
</project>
5 changes: 2 additions & 3 deletions datasource-identifiers/pom.xml
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@@ -1,10 +1,9 @@
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<parent>
<artifactId>datasource</artifactId>
<groupId>edu.ucdenver.ccp</groupId>
<version>0.6-SNAPSHOT</version>
<version>0.6</version>
</parent>
<artifactId>datasource-identifiers</artifactId>

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5 changes: 2 additions & 3 deletions datasource-rdfizer/pom.xml
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@@ -1,10 +1,9 @@
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<parent>
<groupId>edu.ucdenver.ccp</groupId>
<artifactId>datasource</artifactId>
<version>0.6-SNAPSHOT</version>
<version>0.6</version>
</parent>
<artifactId>datasource-rdfizer</artifactId>

Expand Down
7 changes: 3 additions & 4 deletions pom.xml
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@@ -1,9 +1,8 @@
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>edu.ucdenver.ccp</groupId>
<artifactId>datasource</artifactId>
<version>0.6-SNAPSHOT</version>
<version>0.6</version>
<packaging>pom</packaging>

<properties>
Expand Down Expand Up @@ -210,7 +209,7 @@
</goals>
</pluginExecutionFilter>
<action>
<ignore></ignore>
<ignore />
</action>
</pluginExecution>
</pluginExecutions>
Expand Down

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