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DHARMa implementation for new check_residuals() function #643

Merged
merged 78 commits into from
Mar 18, 2024
Merged

DHARMa implementation for new check_residuals() function #643

merged 78 commits into from
Mar 18, 2024

Commits on Oct 26, 2023

  1. DHARMa implementation for new check_residuals() function 

    Fixes #595
    @strengejacke
    strengejacke committed Oct 26, 2023
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  2. draft function

    @strengejacke
    strengejacke committed Oct 26, 2023
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  3. update pkgdown

    @strengejacke
    strengejacke committed Oct 26, 2023
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  4. Don't prematurely return residuals in simulate_residuals()

    @mccarthy-m-g
    mccarthy-m-g committed Oct 26, 2023
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  5. draft check_residuals()

    @mccarthy-m-g
    mccarthy-m-g committed Oct 26, 2023
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  6. Add (temporary?) vignette for basic simulated residuals workflow demo… 

    …nstration and discussion
    @mccarthy-m-g
    mccarthy-m-g committed Oct 26, 2023
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  7. clarify why model fit is needed

    @mccarthy-m-g
    mccarthy-m-g committed Oct 26, 2023
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Commits on Oct 27, 2023

  1. fix vignette issues

    @strengejacke
    strengejacke committed Oct 27, 2023
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  2. lintr

    @strengejacke
    strengejacke committed Oct 27, 2023
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  3. RD; update namespace

    @strengejacke
    strengejacke committed Oct 27, 2023
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  4. add method for check_normality

    @strengejacke
    strengejacke committed Oct 27, 2023
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  5. add class attr for see::plot

    @strengejacke
    strengejacke committed Oct 27, 2023
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  6. save necessary info

    @strengejacke
    strengejacke committed Oct 27, 2023
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  7. fix check issues

    @strengejacke
    strengejacke committed Oct 27, 2023
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  8. rd

    @strengejacke
    strengejacke committed Oct 27, 2023
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  9. Add basic print output for simulate_residuals()

    @mccarthy-m-g
    mccarthy-m-g committed Oct 27, 2023
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Commits on Oct 28, 2023

  1. Merge branch 'main' into strengejacke/issue595

    @strengejacke
    strengejacke authored Oct 28, 2023
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Commits on Oct 29, 2023

  1. Merge branch 'main' into strengejacke/issue595

    @strengejacke
    strengejacke authored Oct 29, 2023
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Commits on Oct 30, 2023

  1. draft

    @strengejacke
    strengejacke committed Oct 30, 2023
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  2. fix print

    @strengejacke
    strengejacke committed Oct 30, 2023
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  3. docs

    @strengejacke
    strengejacke committed Oct 30, 2023
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  4. add plot method

    @strengejacke
    strengejacke committed Oct 30, 2023
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  5. Merge branch 'main' into strengejacke/issue595

    @strengejacke
    strengejacke authored Oct 30, 2023
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Commits on Nov 3, 2023

  1. add print method for check_residuals()

    @mccarthy-m-g
    mccarthy-m-g committed Nov 3, 2023
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Commits on Dec 20, 2023

  1. Merge branch 'main' into strengejacke/issue595

    @strengejacke
    strengejacke authored Dec 20, 2023
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Commits on Mar 13, 2024

  1. Merge branch 'main' into strengejacke/issue595

    @strengejacke
    strengejacke authored Mar 13, 2024
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Commits on Mar 14, 2024

  1. fix

    @strengejacke
    strengejacke committed Mar 14, 2024
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  2. test

    @strengejacke
    strengejacke committed Mar 14, 2024
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Commits on Mar 15, 2024

  1. docs

    @strengejacke
    strengejacke committed Mar 15, 2024
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  2. version bump

    @strengejacke
    strengejacke committed Mar 15, 2024
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  3. news

    @strengejacke
    strengejacke committed Mar 15, 2024
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  4. include DHARMa plot

    @strengejacke
    strengejacke committed Mar 15, 2024
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  5. docs

    @strengejacke
    strengejacke committed Mar 15, 2024
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  6. detrend default to FALSE

    @strengejacke
    strengejacke committed Mar 15, 2024
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  7. allow to directly pass models

    @strengejacke
    strengejacke committed Mar 15, 2024
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  8. close #613

    @strengejacke
    strengejacke committed Mar 15, 2024
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  9. docs

    @strengejacke
    strengejacke committed Mar 15, 2024
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  10. docs, args

    @strengejacke
    strengejacke committed Mar 15, 2024
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  11. zi-inflation check based on DHARMa

    @strengejacke
    strengejacke committed Mar 15, 2024
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  12. Fixes #367

    @strengejacke
    strengejacke committed Mar 15, 2024
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  13. fixes

    @strengejacke
    strengejacke committed Mar 15, 2024
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  14. check_overdispersion method

    @strengejacke
    strengejacke committed Mar 15, 2024
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  15. docs

    @strengejacke
    strengejacke committed Mar 15, 2024
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  16. add test function

    @strengejacke
    strengejacke committed Mar 15, 2024
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  17. fix

    @strengejacke
    strengejacke committed Mar 15, 2024
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  18. fix

    @strengejacke
    strengejacke committed Mar 15, 2024
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Commits on Mar 16, 2024

  1. fix issues

    @strengejacke
    strengejacke committed Mar 16, 2024
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  2. lintr, styler, fix test

    @strengejacke
    strengejacke committed Mar 16, 2024
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  3. fix ZI

    @strengejacke
    strengejacke committed Mar 16, 2024
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  4. add tests

    @strengejacke
    strengejacke committed Mar 16, 2024
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  5. fix

    @strengejacke
    strengejacke committed Mar 16, 2024
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  6. update descr

    @strengejacke
    strengejacke committed Mar 16, 2024
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  7. fix

    @strengejacke
    strengejacke committed Mar 16, 2024
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  8. docs

    @strengejacke
    strengejacke committed Mar 16, 2024
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  9. closes #632

    @strengejacke
    strengejacke committed Mar 16, 2024
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  10. fix genpois

    @strengejacke
    strengejacke committed Mar 16, 2024
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  11. add tests

    @strengejacke
    strengejacke committed Mar 16, 2024
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  12. fix

    @strengejacke
    strengejacke committed Mar 16, 2024
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  13. check_model for DHARMa and simres

    @strengejacke
    strengejacke committed Mar 16, 2024
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  14. docs

    @strengejacke
    strengejacke committed Mar 16, 2024
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  15. tweak

    @strengejacke
    strengejacke committed Mar 16, 2024
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  16. ...

    @strengejacke
    strengejacke committed Mar 16, 2024
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  17. try

    @strengejacke
    strengejacke committed Mar 16, 2024
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Commits on Mar 17, 2024

  1. Fix #696

    @strengejacke
    strengejacke committed Mar 17, 2024
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  2. fix

    @strengejacke
    strengejacke committed Mar 17, 2024
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  3. add tests

    @strengejacke
    strengejacke committed Mar 17, 2024
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  4. add tests

    @strengejacke
    strengejacke committed Mar 17, 2024
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  5. fix test

    @strengejacke
    strengejacke committed Mar 17, 2024
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  6. detect over and underdispersion

    @strengejacke
    strengejacke committed Mar 17, 2024
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  7. docs

    @strengejacke
    strengejacke committed Mar 17, 2024
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  8. fix Underdispersion? #263

    @strengejacke
    strengejacke committed Mar 17, 2024
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  9. typo, tests

    @strengejacke
    strengejacke committed Mar 17, 2024
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Commits on Mar 18, 2024

  1. check_outliers for DHARMa

    @strengejacke
    strengejacke committed Mar 18, 2024
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  2. fix

    @strengejacke
    strengejacke committed Mar 18, 2024
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  3. docs

    @strengejacke
    strengejacke committed Mar 18, 2024
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  4. docs

    @strengejacke
    strengejacke committed Mar 18, 2024
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  5. add tests

    @strengejacke
    strengejacke committed Mar 18, 2024
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  6. lintrs, spelling

    @strengejacke
    strengejacke committed Mar 18, 2024
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