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IDtables_ALL
IDtables_ALL
 
 
Literature-data
Literature-data
 
 
MEPS_submission
MEPS_submission
 
 
PLOS_Bio_submission
PLOS_Bio_submission
 
 
RMarkdown_MS
RMarkdown_MS
 
 
R_scripts
R_scripts
 
 
Shell_scripts
Shell_scripts
 
 
Supplementary_figures
Supplementary_figures
 
 
fixing_Silva138_overwrites
fixing_Silva138_overwrites
 
 
old2019scripts
old2019scripts
 
 
.DS_Store
.DS_Store
 
 
.gitattributes
.gitattributes
 
 
ALL_Metaxa_diversity.R
ALL_Metaxa_diversity.R
 
 
AllSamplesParsed-noseqs.numbers
AllSamplesParsed-noseqs.numbers
 
 
AllSamplesParsed.numbers
AllSamplesParsed.numbers
 
 
AllSamplesParsed.tsv
AllSamplesParsed.tsv
 
 
AllSamplesParsed_GenBankCustom.numbers
AllSamplesParsed_GenBankCustom.numbers
 
 
AllSamplesParsed_default.tsv
AllSamplesParsed_default.tsv
 
 
AllSamplesParsed_defaults.numbers
AllSamplesParsed_defaults.numbers
 
 
Bioanalyzer10-16-19.pdf
Bioanalyzer10-16-19.pdf
 
 
Icon
Icon
 
 
MB_SummaryTable.numbers
MB_SummaryTable.numbers
 
 
MB_SummaryTable.pdf
MB_SummaryTable.pdf
 
 
MolecularLabProtocol.txt
MolecularLabProtocol.txt
 
 
README.md
README.md
 
 
SILVA138plus_parsed.tsv
SILVA138plus_parsed.tsv
 
 
SequencesParsed.tsv
SequencesParsed.tsv
 
 
SequencesSamplesUnique.tsv
SequencesSamplesUnique.tsv
 
 
To download from NCBI.txt
To download from NCBI.txt
 
 
allsequences.fasta
allsequences.fasta
 
 
backupMiSeqScripts.txt
backupMiSeqScripts.txt
 
 
blast.taxonomy.SSUcombo.txt
blast.taxonomy.SSUcombo.txt
 
 
blast.taxonomy.combo.txt
blast.taxonomy.combo.txt
 
 
blast.taxonomy.txt
blast.taxonomy.txt
 
 
correcting_taxonomy.R
correcting_taxonomy.R
 
 
customDBparsed.tsv
customDBparsed.tsv
 
 
customRUN2_17nine.tsv
customRUN2_17nine.tsv
 
 
embl.taxonomy.txt
embl.taxonomy.txt
 
 
extractions_GC_Nov2020.tsv
extractions_GC_Nov2020.tsv
 
 
meps.csl.xml
meps.csl.xml
 
 
metabarcoding_review.numbers
metabarcoding_review.numbers
 
 
metabarcoding_review.txt
metabarcoding_review.txt
 
 
metabarcoding_workshop_theory.pdf
metabarcoding_workshop_theory.pdf
 
 
nonmetazoan.tsv
nonmetazoan.tsv
 
 
primersSiphWeb.tsv
primersSiphWeb.tsv
 
 
seqs-feats.csv
seqs-feats.csv
 
 
trawls_data_2019.csv
trawls_data_2019.csv
 
 
trawls_data_2019.numbers
trawls_data_2019.numbers
 
 
trawls_data_Nov2020.tsv
trawls_data_Nov2020.tsv
 
 

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siphweb_metabarcoding

Metabarcoding analysis pipelines and scripts

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Metabarcoding analysis pipelines and scripts

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