Merge pull request #31 from dpryan79/rename_header

Rename io.h
dpryan79 · Jul 24, 2017 · 9a2936c · 9a2936c
2 parents 1a0cc33 + 3a2cc67
commit 9a2936c
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diff --git a/bigWig.h b/bigWig.h
@@ -1,4 +1,4 @@
-#include "io.h"
+#include "bigWigIO.h"
 #include "bwValues.h"
 #include <inttypes.h>
 #include <zlib.h>
@@ -53,7 +53,7 @@ extern "C" {
 /*!
  * The library version number
  */
-#define LIBBIGWIG_VERSION 0.3.4
+#define LIBBIGWIG_VERSION 0.4.0
 
 /*!
  * If 1, then this library was compiled with remote file support.

diff --git a/io.h → bigWigIO.h b/io.h → bigWigIO.h
@@ -7,7 +7,7 @@ typedef void CURL;
 #define CURLE_OK 0
 #define CURLE_FAILED_INIT 1
 #endif
-/*! \file io.h
+/*! \file bigWigIO.h
  * These are (typically internal) IO functions, so there's generally no need for you to directly use them!
  */
 

diff --git a/docs/html/BigWigIO_8h.html b/docs/html/BigWigIO_8h.html
diff --git a/docs/html/BigWigIO_8h_source.html b/docs/html/BigWigIO_8h_source.html
diff --git a/docs/html/annotated.html b/docs/html/annotated.html
@@ -3,16 +3,15 @@
 <head>
 <meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
 <meta http-equiv="X-UA-Compatible" content="IE=9"/>
-<meta name="generator" content="Doxygen 1.8.11"/>
+<meta name="generator" content="Doxygen 1.8.6"/>
 <title>libBigWig: Data Structures</title>
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 <script type="text/javascript" src="jquery.js"></script>
 <script type="text/javascript" src="dynsections.js"></script>
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-<script type="text/javascript" src="search/searchdata.js"></script>
 <script type="text/javascript" src="search/search.js"></script>
 <script type="text/javascript">
-  $(document).ready(function() { init_search(); });
+  $(document).ready(function() { searchBox.OnSelectItem(0); });
 </script>
 <link href="doxygen.css" rel="stylesheet" type="text/css" />
 </head>
@@ -22,7 +21,7 @@
 <table cellspacing="0" cellpadding="0">
  <tbody>
  <tr style="height: 56px;">
-  <td id="projectalign" style="padding-left: 0.5em;">
+  <td style="padding-left: 0.5em;">
    <div id="projectname">libBigWig
    </div>
   </td>
@@ -31,7 +30,7 @@
 </table>
 </div>
 <!-- end header part -->
-<!-- Generated by Doxygen 1.8.11 -->
+<!-- Generated by Doxygen 1.8.6 -->
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 var searchBox = new SearchBox("searchBox", "search",false,'Search');
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@@ -72,7 +71,7 @@
      onmouseover="return searchBox.OnSearchSelectShow()"
      onmouseout="return searchBox.OnSearchSelectHide()"
      onkeydown="return searchBox.OnSearchSelectKey(event)">
-</div>
+<a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(0)"><span class="SelectionMark">&#160;</span>All</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(1)"><span class="SelectionMark">&#160;</span>Data Structures</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(2)"><span class="SelectionMark">&#160;</span>Files</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(3)"><span class="SelectionMark">&#160;</span>Functions</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(4)"><span class="SelectionMark">&#160;</span>Variables</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(5)"><span class="SelectionMark">&#160;</span>Typedefs</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(6)"><span class="SelectionMark">&#160;</span>Enumerations</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(7)"><span class="SelectionMark">&#160;</span>Macros</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(8)"><span class="SelectionMark">&#160;</span>Pages</a></div>
 
 <!-- iframe showing the search results (closed by default) -->
 <div id="MSearchResultsWindow">
@@ -88,27 +87,27 @@
 <div class="contents">
 <div class="textblock">Here are the data structures with brief descriptions:</div><div class="directory">
 <table class="directory">
-<tr id="row_0_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structbbOverlappingEntries__t.html" target="_self">bbOverlappingEntries_t</a></td><td class="desc">Holds interval:str associations </td></tr>
-<tr id="row_1_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structbigWigFile__t.html" target="_self">bigWigFile_t</a></td><td class="desc">A structure that holds everything needed to access a bigWig file </td></tr>
-<tr id="row_2_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structbigWigHdr__t.html" target="_self">bigWigHdr_t</a></td><td class="desc">The header section of a bigWig file </td></tr>
-<tr id="row_3_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structbwDataHeader__t.html" target="_self">bwDataHeader_t</a></td><td class="desc">The header section of a given data block </td></tr>
-<tr id="row_4_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structbwOverlapBlock__t.html" target="_self">bwOverlapBlock_t</a></td><td class="desc">This structure holds the data blocks that overlap a given interval </td></tr>
-<tr id="row_5_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structbwOverlapIterator__t.html" target="_self">bwOverlapIterator_t</a></td><td class="desc">A structure to hold iterations One of intervals and entries should be used to access records from bigWig or bigBed files, respectively </td></tr>
-<tr id="row_6_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structbwOverlappingIntervals__t.html" target="_self">bwOverlappingIntervals_t</a></td><td class="desc">Holds interval:value associations </td></tr>
-<tr id="row_7_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structbwRTree__t.html" target="_self">bwRTree_t</a></td><td class="desc"></td></tr>
-<tr id="row_8_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structbwRTreeNode__t.html" target="_self">bwRTreeNode_t</a></td><td class="desc">A node within an R-tree holding the index for data </td></tr>
-<tr id="row_9_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structbwWriteBuffer__t.html" target="_self">bwWriteBuffer_t</a></td><td class="desc">This is only needed for writing bigWig files (and won't be created otherwise) This should be removed from <a class="el" href="bigWig_8h.html">bigWig.h</a> </td></tr>
-<tr id="row_10_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structbwZoomHdr__t.html" target="_self">bwZoomHdr_t</a></td><td class="desc">BigWig files have multiple "zoom" levels, each of which has its own header. This hold those headers </td></tr>
-<tr id="row_11_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structchromList__t.html" target="_self">chromList_t</a></td><td class="desc">Holds the chromosomes and their lengths </td></tr>
-<tr id="row_12_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structURL__t.html" target="_self">URL_t</a></td><td class="desc">This structure holds the file pointers and buffers needed for raw access to local and remote files </td></tr>
+<tr id="row_0_" class="even"><td class="entry"><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2cl.png" alt="C" width="24" height="22" /><a class="el" href="structbbOverlappingEntries__t.html" target="_self">bbOverlappingEntries_t</a></td><td class="desc">Holds interval:str associations </td></tr>
+<tr id="row_1_"><td class="entry"><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2cl.png" alt="C" width="24" height="22" /><a class="el" href="structbigWigFile__t.html" target="_self">bigWigFile_t</a></td><td class="desc">A structure that holds everything needed to access a bigWig file </td></tr>
+<tr id="row_2_" class="even"><td class="entry"><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2cl.png" alt="C" width="24" height="22" /><a class="el" href="structbigWigHdr__t.html" target="_self">bigWigHdr_t</a></td><td class="desc">The header section of a bigWig file </td></tr>
+<tr id="row_3_"><td class="entry"><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2cl.png" alt="C" width="24" height="22" /><a class="el" href="structbwDataHeader__t.html" target="_self">bwDataHeader_t</a></td><td class="desc">The header section of a given data block </td></tr>
+<tr id="row_4_" class="even"><td class="entry"><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2cl.png" alt="C" width="24" height="22" /><a class="el" href="structbwOverlapBlock__t.html" target="_self">bwOverlapBlock_t</a></td><td class="desc">This structure holds the data blocks that overlap a given interval </td></tr>
+<tr id="row_5_"><td class="entry"><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2cl.png" alt="C" width="24" height="22" /><a class="el" href="structbwOverlapIterator__t.html" target="_self">bwOverlapIterator_t</a></td><td class="desc">A structure to hold iterations One of intervals and entries should be used to access records from bigWig or bigBed files, respectively </td></tr>
+<tr id="row_6_" class="even"><td class="entry"><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2cl.png" alt="C" width="24" height="22" /><a class="el" href="structbwOverlappingIntervals__t.html" target="_self">bwOverlappingIntervals_t</a></td><td class="desc">Holds interval:value associations </td></tr>
+<tr id="row_7_"><td class="entry"><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2cl.png" alt="C" width="24" height="22" /><a class="el" href="structbwRTree__t.html" target="_self">bwRTree_t</a></td><td class="desc"></td></tr>
+<tr id="row_8_" class="even"><td class="entry"><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2cl.png" alt="C" width="24" height="22" /><a class="el" href="structbwRTreeNode__t.html" target="_self">bwRTreeNode_t</a></td><td class="desc">A node within an R-tree holding the index for data </td></tr>
+<tr id="row_9_"><td class="entry"><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2cl.png" alt="C" width="24" height="22" /><a class="el" href="structbwWriteBuffer__t.html" target="_self">bwWriteBuffer_t</a></td><td class="desc">This is only needed for writing bigWig files (and won't be created otherwise) This should be removed from <a class="el" href="bigWig_8h.html">bigWig.h</a> </td></tr>
+<tr id="row_10_" class="even"><td class="entry"><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2cl.png" alt="C" width="24" height="22" /><a class="el" href="structbwZoomHdr__t.html" target="_self">bwZoomHdr_t</a></td><td class="desc">BigWig files have multiple "zoom" levels, each of which has its own header. This hold those headers </td></tr>
+<tr id="row_11_"><td class="entry"><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2cl.png" alt="C" width="24" height="22" /><a class="el" href="structchromList__t.html" target="_self">chromList_t</a></td><td class="desc">Holds the chromosomes and their lengths </td></tr>
+<tr id="row_12_" class="even"><td class="entry"><img src="ftv2lastnode.png" alt="\" width="16" height="22" /><img src="ftv2cl.png" alt="C" width="24" height="22" /><a class="el" href="structURL__t.html" target="_self">URL_t</a></td><td class="desc">This structure holds the file pointers and buffers needed for raw access to local and remote files </td></tr>
 </table>
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