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11 Open 9 Closed
11 Open 9 Closed
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Issues list

How can I use other algorithms (e.g., UMAP, PHATE) to do the dimensional reduction?
#73 opened Nov 7, 2024 by zyll123
Computing niches in cosmx data using fov as batch_key
#72 opened Oct 31, 2024 by sarajimenez
Output st_data.obsm['COVET'] of scenvi.compute_covet has the shape nx64x64, irrespective of k and g
#70 opened Sep 16, 2024 by KarolineHoller
Allow ENVI to cache COVET matrices on disk to avoid recomputing COVET and to enable larger datasets enhancement New feature or request
#68 opened Jul 17, 2024 by tddough98
How do you deal with the square root of negative covariance terms?
#67 opened Jul 16, 2024 by dangeles
Is this algorithm suitable for analyzing 10X Visium data?
#66 opened Jun 12, 2024 by EddieLv
Issue with latent space embedding with new version of ENVI
#65 opened Jun 12, 2024 by rmathieu25
2
Question on computing niche cell type composition
#56 opened May 6, 2024 by ankitbioinfo
1
An error when installing envi
#9 opened Apr 5, 2024 by HelloWorldLTY
6
Question on computing niches on spatial data
#8 opened Apr 3, 2024 by abs51295
2
Question on input to ENVI
#7 opened Mar 20, 2024 by soerenab
3
ProTip! Exclude everything labeled bug with -label:bug.