Merge pull request #105 from jdossgollin/master #64

	on:
	repository_dispatch:
	push:
	branches: [master]

	name: Render and Publish

	# you need these permissions to publish to GitHub pages
	permissions:
	contents: write
	pages: write

	# https://github.com/marketplace/actions/setup-miniconda
	defaults:
	run:
	shell: bash -l {0}

	jobs:
	build-deploy:
	runs-on: ubuntu-latest

	# run only on upstream, not on downstream
	if: github.repository == 'dossgollin-lab/dossgollin-lab.github.io'

	steps:
	- name: Check out repository
	uses: actions/checkout@v4
	with:
	submodules: true

	- name: Set up Quarto
	uses: quarto-dev/quarto-actions/setup@v2

	- name: Update bibliography
	run: \|
	cd _bibliography
	git branch -u origin/master master
	cd ..
	git submodule update --remote --recursive

	- name: Set up Conda Environment
	uses: conda-incubator/setup-miniconda@v2
	with:
	activate-environment: dossgollin-lab
	environment-file: _environment.yml

	- name: Generate Publication Files
	run: python bibtex_to_qmd.py

	- name: Publish to GitHub Pages (and render)
	uses: quarto-dev/quarto-actions/publish@v2
	with:
	target: gh-pages
	env:
	GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} # this secret is always available for github actions

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