v1.4.0 Fix truncated reads from cache

Fixed bug where dxfuse returned truncated data when it mistakenly expected data to be in its prefetch cache.

Revert /listFolder changes from e3f92d8 as the DNAnexus API was not optimized for this.

v1.3.0 List folder objects and describe content in a single request

List folder objects and describe content in a single /listFolder request instead of /listFolder and then iterating with /system/findDataObjects.

Update MacOS runner version in GHA.

v1.2.0 Fix dnanexus files that are symlinks

Fix downloading dnanexus files that are backed by symlinks. Previously this only worked for symlinks on a public s3 bucket.

Update Linux build from Ubuntu 18.04 --> 20.04 github action runner as 18.04 was deprecated.

v1.1.1 Remove command server

Remove the command server functionality that was previously used in dxfuse -sync which was deprecated in v1.0.0. This will allow multiple dxfuse processes to run on the same machine without port conflicts.

v1.1.0 Write temporary manifest to $HOME/.dxfuse/

Write temporary manifest to $HOME/.dxfuse/ instead of /tmp/ to allow multiple users to run an instance dxfuse concurrently on the same machine.

v1.0.1 Fix crash when file-xxxx/download returns error

Switch back to go-sqlite3 with CGO_ENABLED build for sqlite dependency.

Fix crash when file-xxxx/download returns error

v1.0.0 -limitedWrite mode

Backwards incompatible release v1.0.0.

New flag -limitedWrite for supporting append only writes to DNAnexus files. See README for supported operations and limitations of this mode.

Remove dxfuse -sync command previously used for syncing writeable files to DNAnexus.

Enable FUSE options for kernel readahead and pagecache. Enabling pagecache adds support for shared read-only mmap which is used by many applications, e.g. gatk, tidyverse readr. Kernel readahead fixes some dxfuse crashes with prefetching and may be more stable.

v1.0.0-rc.5 Fix RmDir of spark temporary output folders

Fix filepaths to use filepath package instead of concatenating strings with /
Bump golang version to 1.16.10

v1.0.0-rc.4 Raise min http client pool

Increase minimum http client pool to 30. Lower wait time to check if file has been closed to 400ms.

v1.0.0-rc.3 Limit concurrent file writes

Attempt to reduce memory usage by limiting the number of files which can be written to concurrently. The limit is greater of 15 or CPUs*3

Lower the initial upload file part size from 96MiB --> 16MiB. Each subsequent part n increases in size 16 * 1.1^nMiB up to a maximum part size of 700MiB.

Raise the HttpClient pool used for DNAnexus api calls to a minimum of 15 and up to CPUs*3.