set genotyper_config.required_dp=1 for DeepVariant config presets

dnanexus-rnd · Apr 11, 2024 · 45af5a1 · 45af5a1
1 parent fae491b
commit 45af5a1
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/src/cli_utils.cc b/src/cli_utils.cc
@@ -830,7 +830,7 @@ static const char* config_presets_yml = R"eof(
         monoallelic_sites_for_lost_alleles: true
         max_alleles_per_site: 32
     genotyper_config:
-        required_dp: 0
+        required_dp: 1
         revise_genotypes: true
         snv_prior_calibration: 0.6
         indel_prior_calibration: 0.45
@@ -879,7 +879,7 @@ static const char* config_presets_yml = R"eof(
         monoallelic_sites_for_lost_alleles: true
         max_alleles_per_site: 32
     genotyper_config:
-        required_dp: 0
+        required_dp: 1
         revise_genotypes: true
         snv_prior_calibration: 0.6
         indel_prior_calibration: 0.45
@@ -928,7 +928,7 @@ static const char* config_presets_yml = R"eof(
         monoallelic_sites_for_lost_alleles: true
         max_alleles_per_site: 32
     genotyper_config:
-        required_dp: 0
+        required_dp: 1
         revise_genotypes: true
         snv_prior_calibration: 0.375
         indel_prior_calibration: 0.375