GitHub - dionne099/Afum_baf: baf gene analysis

Name		Name	Last commit message	Last commit date
Latest commit History 8 Commits
Strain_tree/pipeline		Strain_tree/pipeline
heatmap_tree		heatmap_tree
baf-vs-Afum_genomes.FASTA.seqs		baf-vs-Afum_genomes.FASTA.seqs
baf-vs-Afum_genomes.FASTA.seqs_renamed		baf-vs-Afum_genomes.FASTA.seqs_renamed
baf-vs-Afum_genomes.FASTA.tab		baf-vs-Afum_genomes.FASTA.tab
baf.hmmalign.aln		baf.hmmalign.aln
baf.hmmalign.msa		baf.hmmalign.msa
baf.hmmalign.tre		baf.hmmalign.tre
baf.mafft.aln		baf.mafft.aln
baf.mafft.tre		baf.mafft.tre
bafA.cds		bafA.cds
bafHits-to-names.SSEARCH		bafHits-to-names.SSEARCH
bafHits-to-names.SSEARCH.tab		bafHits-to-names.SSEARCH.tab
baf_cds.fa		baf_cds.fa
baf_mRNA-vs-Afum_genomes.DNA.domtbl		baf_mRNA-vs-Afum_genomes.DNA.domtbl
baf_mRNA-vs-Afum_genomes.DNA.hmmsearch		baf_mRNA-vs-Afum_genomes.DNA.hmmsearch
baf_mRNA.fa		baf_mRNA.fa
baf_mRNA.hmm		baf_mRNA.hmm
baf_pep.fa		baf_pep.fa
extract_DNA_hits.pl		extract_DNA_hits.pl
extract_DNA_hits_hmmsearch.pl		extract_DNA_hits_hmmsearch.pl
extract_DNA_hits_native.pl		extract_DNA_hits_native.pl
name2counts.pl		name2counts.pl
pipeline.sh		pipeline.sh
rename_hits.pl		rename_hits.pl
rename_tree_nodes.pl		rename_tree_nodes.pl
strain_gene_counts.tab		strain_gene_counts.tab