Test

WIP: update CI. #185

	name: Test

	on: [push, pull_request]

	jobs:
	test:
	runs-on: ubuntu-latest

	strategy:
	matrix:
	python: ["3.10"]

	name: Python ${{ matrix.python }}

	# We want to run on external PRs, but not on our own internal PRs as they'll be run by the push to the branch.
	if: github.event_name == 'push' \|\| github.event.pull_request.head.repo.full_name != github.repository

	steps:
	- uses: actions/checkout@v4
	with:
	fetch-depth: 0

	- name: cache conda
	uses: actions/cache@v3
	env:
	CACHE_NUMBER: 0
	with:
	path: ~/conda_pkgs_dir
	key:
	${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ hashFiles('environment.yml') }}

	- name: setup conda
	uses: conda-incubator/setup-miniconda@3b0f2504dd76ef23b6d31f291f4913fb60ab5ff3
	with:
	auto-update-conda: true
	python-version: 3.9
	channels: conda-forge,bioconda
	miniforge-variant: Mambaforge
	miniforge-version: latest
	use-mamba: true
	mamba-version: "*"
	activate-environment: sourmash_dev
	auto-activate-base: false
	use-only-tar-bz2: true

	- name: Install coverage dependencies
	run: pip install pytest-cov pytest-dependency setuptools

	# - name: Build
	# run: python setup.py build_ext --inplace

	- name: Install charcoal
	run: pip install -e .

	- run: pytest tests

	# - run: pytest tests --cov=.

	# - name: Upload coverage to Codecov
	# uses: codecov/codecov-action@v1

Provide feedback