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RSEM will extract gene_name/transcript_name from GTF file when possible; if extracted, gene_name/transcript_name will append at the end of gene_id/transcript_id with an underscore in between
Modified 'rsem-plot-model' to indicate the modes of fragment length and read length distributions
Modified 'rsem-plot-model' to present alignment statistics better using both barplot and pie chart
Updated 'EBSeq' to version 1.2.0
Added coefficient of quartile variation in addition to credibility intervals when '--calc-ci' is turned on
Added '--single-cell-prior' option to notify RSEM to use a sparse prior (Dir(0.1)) for single cell data; this option only makes sense if '--calc-pme' or '--calc-ci' is set