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Updated WHAT_IS_NEW
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Bo Li committed Oct 2, 2016
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Expand Up @@ -3,6 +3,7 @@ RSEM v1.3.0
- Added Prior-Enhanced RSEM (pRSEM) as a submodule
- Introduced `--strandedness <none|forward|reverse>` option, `--strand-specific` and `--forward-prob` are deprecated (but still supported)
- Revised documentation for `rsem-plot-model`, maked it clear that in alignment statistics, isoform-level (instead of genome-level) multi-mapping reads are shown
- Significantly improved the output information of `rsem-sam-validator`: if indels/clippings/skips are detected in alignments or alignments exceed transcript boundaries, `rsem-sam-validator` will report them instead of telling you the input is valid
- Updated the warning message to ask users to make sure that they align their reads agains a set of transcripts instead of genome when RSEM finds less sequences in the BAM file than RSEM's indices

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