Fixed a small bug in rsem-prepare-reference

deweylab · Nov 11, 2015 · 308e5b6 · 308e5b6
1 parent 2ffbfa7
commit 308e5b6
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/rsem-prepare-reference b/rsem-prepare-reference
@@ -104,7 +104,8 @@ else {
     &runCommand($command);
 }
 
-$command = "rsem-preref $ARGV[1].transcripts.fa $polyAChoice $ARGV[1] -l $polyALen";
+$command = "rsem-preref $ARGV[1].transcripts.fa $polyAChoice $ARGV[1]";
+if ($polyAChoice != 1) { $command .= " -l $polyALen"; }
 if ($polyAChoice == 2) { $command .= " -f $subsetFile"; }
 if ($quiet) { $command .= " -q"; }