NoisyImgSegPipeline

This MATLAB tool generates 2D/3D synthetic images that mimic membrane-stained cells. First, it creates ground truth images (stored in GTGen/gt_images), adds noise to them (Noise/test_images) and runs selected segmentation algorithms on these test images.

Prerequisites

This tool is tested on MATLAB R2015b. You need to have Parallel Computing Toolbox and Image Processing Toolbox.

Getting ready

Add all the folders to your path. Check 'example' folder to see the ground truth, noisy and segmented image examples (or look below). To quickly test the software, run main([128 128 10], 70, 1, 3, 1).

If you have any questions or find issues, please let me know.

Examples

• Ground truth image:
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• Noisy image
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• Watershed segmentation result
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