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I have changed how the timer works for ensuring that the user does not get stuck with a hidden window. Instead of always waiting for the system tray to become available before deciding if to disable autohide or show the window. Now we perform showing the window or starting hidden. If we start hidden and the systemtray was not available, we then wait a period of time to check it's not being slow at becoming available, then we force the window to show.
As you can see in the table below this removes the potential for waiting at startup from the 4 different startup procedures to just 1. And this use case is an unlikely scenario now that the settings are disabled if the system tray isn't available (the user would have had to enable autohide when the system tray was available and then disable the system tray on their system).